Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 341 a.a., flagellar motor switch protein FliM (RefSeq) from Shewanella loihica PV-4

 Score =  612 bits (1577), Expect = e-180
 Identities = 304/343 (88%), Positives = 328/343 (95%), Gaps = 2/343 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           MSDLLSQDEIDALLHGVDDVEE+   DA+  +AR+YDFSSQDRIVRGRMPTLEIVNERFA
Sbjct: 1   MSDLLSQDEIDALLHGVDDVEEEEVSDAL--DARAYDFSSQDRIVRGRMPTLEIVNERFA 58

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRF PLKGTALITMEARL
Sbjct: 59  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARL 118

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYK+AWAPVMDVEFDYLDS
Sbjct: 119 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVEFDYLDS 178

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           EVNPAMANIVSPTEVVV++SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSD QDTD
Sbjct: 179 EVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTD 238

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
           MRWSQAL DEIMDV+VG DAT+VE E++LKDVM FKAGDIIP+E+PEYI++R+EDLPTYR
Sbjct: 239 MRWSQALKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPEYIVLRVEDLPTYR 298

Query: 301 CKMGRSRDNLALKIYEKIPRPETVKSELQLVTRKGKARDISEL 343
           CK+GRSR+NLAL I EKIPRPETVK+ELQLVT+K K+RD++ +
Sbjct: 299 CKLGRSRENLALNIREKIPRPETVKTELQLVTKKSKSRDLNNI 341