Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., flagellar motor switch protein FliM-like protein from Marinobacter adhaerens HP15

 Score =  404 bits (1039), Expect = e-117
 Identities = 196/330 (59%), Positives = 257/330 (77%), Gaps = 2/330 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           M DLLSQDEIDALLHGVDD + D   +      +SYD +SQDRIVRGRMPTLE++NERFA
Sbjct: 1   MQDLLSQDEIDALLHGVDDGDIDTYEETDDTGIKSYDLASQDRIVRGRMPTLEMINERFA 60

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R+ RIS+FN+MRR A+VS  GVQ++KFGEY+HTL+VPTSLN+ +  PL+GT+L  ++A+L
Sbjct: 61  RYTRISLFNLMRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKL 120

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF LVDNFFGG+GR HAKIEGREFTPTE RIVQ++L  +F D K+AW  V+ V+F+YL S
Sbjct: 121 VFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMKEAWHAVLKVDFEYLSS 179

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           EVNPAMANIVSP+EVVV+++FHIE+DGGGG+ H  +PYSMIEPIR++LDAGVQSD  D D
Sbjct: 180 EVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVD 239

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
            RW  AL ++I +V V  + TV    ++L+D+   KAGDIIP+E+PE++ +    +P Y+
Sbjct: 240 ERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPEHLTVTANGIPIYK 299

Query: 301 CKMGRSRDNLALKIYEKIPRPETVKSELQL 330
             +G     LAL+I+E+   P+ VK +L++
Sbjct: 300 ATLGTRDGKLALRIHERASVPK-VKKQLKV 328