Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., flagellar motor switch protein FliM from Pantoea sp. MT58

 Score =  244 bits (624), Expect = 2e-69
 Identities = 122/313 (38%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 4   LLSQDEIDALLHGVD-DVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFARH 62
           +LSQ EIDALL+G     EE+ + +    + R YD ++Q R+VR R+  LEI+NERFAR 
Sbjct: 5   ILSQAEIDALLNGDSGSAEEEKKQNGPEGDIRPYDPNTQRRVVRERLQALEIINERFARS 64

Query: 63  LRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVF 122
            R+++FN++RR+ ++S+  +++  + E+   L VPT+LN++   PL+GTAL+     LVF
Sbjct: 65  FRMALFNLLRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVF 124

Query: 123 ILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSEV 182
           I VDN FGGDGRF  K+EGREFT TE+R+++ +LK+  + Y DAW  +  ++ +Y+ SE+
Sbjct: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSEM 184

Query: 183 NPAMANI-VSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDM 241
                NI  SP ++VV   F +E+    G+F+I +P+SMIEP+RELL      + +  D 
Sbjct: 185 QVKFTNITTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDN 244

Query: 242 RWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYRC 301
            W   L  ++   ++   A   E  L L  ++  K GD++PIE PE I+  ++ +P    
Sbjct: 245 HWRDNLVKQVQHSELELIAHFAETSLRLSRILQLKPGDVLPIEKPERIIAHVDSVPVLTS 304

Query: 302 KMGRSRDNLALKI 314
           + G      AL++
Sbjct: 305 QYGTMNGQYALRV 317