Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., flagellar motor switch protein FliM from Herbaspirillum seropedicae SmR1

 Score =  283 bits (724), Expect = 4e-81
 Identities = 135/325 (41%), Positives = 208/325 (64%), Gaps = 3/325 (0%)

Query: 5   LSQDEIDALLHGVD-DVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFARHL 63
           LSQ+E+DALL GV  D +E+  ++      R+Y+ ++Q+RIVRGRMPTLEI+NERFAR  
Sbjct: 6   LSQEEVDALLKGVTGDEDEEKVVEEAPGTVRTYNLATQERIVRGRMPTLEIINERFARLF 65

Query: 64  RISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFI 123
           RI +FN + R AE+S+  V++ K+ E++  L VPT+LN+V   P +G  L+  + + VF+
Sbjct: 66  RIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDPQFVFM 125

Query: 124 LVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSEVN 183
           LVDN FGGDGRFH +IEGREFTPTE+RI+  +L+I FE Y  +W P+  +EF+++ SE+N
Sbjct: 126 LVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFIRSEMN 185

Query: 184 PAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRW 243
              ANI +P EVVV  +F +E+    G+ HI  PYSMIEP+R+ L + +Q +  + D RW
Sbjct: 186 TQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALEVDKRW 245

Query: 244 SQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYRCKM 303
            + +  +I   +V          +   D+++ + GD+IP++    +  +++ +P   C  
Sbjct: 246 IRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPVMECSY 305

Query: 304 GRSRDNLALKIYE--KIPRPETVKS 326
           G+S    AL++ +   I   ET +S
Sbjct: 306 GQSNGQYALRVEKLLSITHQETPES 330