Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 338 a.a., flagellar motor switch protein FliM from Dyella japonica UNC79MFTsu3.2

 Score =  368 bits (945), Expect = e-106
 Identities = 176/325 (54%), Positives = 242/325 (74%), Gaps = 2/325 (0%)

Query: 1   MSDLLSQDEIDALLHGVD--DVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNER 58
           MSDLLSQ+EIDALL+GV+  DV    +          YDF+ QDRIVRGR+PTLE+VN+R
Sbjct: 1   MSDLLSQEEIDALLNGVNGGDVPTGGDEPPPKDAVLQYDFTQQDRIVRGRLPTLEMVNDR 60

Query: 59  FARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEA 118
           FAR+ R  +F ++R+  EVS+ GV+M KF EYVH L VPT+LN+VR  PL+GTALI ME 
Sbjct: 61  FARYFRTGIFGVLRKTCEVSVLGVKMSKFVEYVHGLAVPTNLNLVRVKPLRGTALIVMEP 120

Query: 119 RLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYL 178
           RLVF ++DNFFGGDGR+HA+IEGR+FTPTE R++Q++L  IF    +AW+PV+ + F++L
Sbjct: 121 RLVFSVIDNFFGGDGRYHARIEGRDFTPTETRVIQIVLAEIFTAMTEAWSPVLPLNFEFL 180

Query: 179 DSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQD 238
           +SE+NP  ANIVSPTE VV++ FH+EVDGGGG+ H+T+PYSM+EPIR LLDAGVQSD+ +
Sbjct: 181 NSEINPQFANIVSPTETVVVSRFHVEVDGGGGEIHLTLPYSMVEPIRVLLDAGVQSDRVE 240

Query: 239 TDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPT 298
            D RW Q+LH E++D +V   + ++E +L + D +  + GD+IP+ LPE   +  ED+P 
Sbjct: 241 RDERWLQSLHQEVLDAEVELSSLLLETDLQIGDFLKLRPGDVIPVNLPELCTVFAEDVPI 300

Query: 299 YRCKMGRSRDNLALKIYEKIPRPET 323
           +R ++GR+  + A++      R ET
Sbjct: 301 FRGQLGRTGGHKAVRFQTPAGRRET 325