Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 336 a.a., flagellar motor switch protein FliM from Ralstonia sp. UNC404CL21Col

 Score =  310 bits (794), Expect = 3e-89
 Identities = 143/313 (45%), Positives = 211/313 (67%), Gaps = 1/313 (0%)

Query: 3   DLLSQDEIDALLHGVDDVEEDNELDAVGQEA-RSYDFSSQDRIVRGRMPTLEIVNERFAR 61
           + LSQ+EIDALL GV D  +D+ ++A      RSY+  SQ+RIVRGRMPTLEI+NERFAR
Sbjct: 5   EFLSQEEIDALLKGVSDDADDDPVEAADPSGIRSYNLGSQERIVRGRMPTLEIINERFAR 64

Query: 62  HLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLV 121
           + RI +FN MRR AE+S+  V++ K+ E++  L VPTSLN+V   PL+GTAL   +  L+
Sbjct: 65  NWRIGLFNFMRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLI 124

Query: 122 FILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSE 181
           F++VDN FGGDGRFH ++EGR+FT  E+RI+Q +L ++FE Y  AW PV  ++F++L  E
Sbjct: 125 FLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRME 184

Query: 182 VNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDM 241
           ++   AN+ +P EVV+  SF IE+   GGD HI MPY+MIEPIR+ L + +Q +  + D 
Sbjct: 185 MHTEFANVATPNEVVITTSFSIELGSNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDK 244

Query: 242 RWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYRC 301
           RW + L  ++   +V   A +   ++ + D++N K GD+IP+EL + +  +++ +P   C
Sbjct: 245 RWLRLLSQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPLELDDCVTAKVDGVPVMEC 304

Query: 302 KMGRSRDNLALKI 314
             G      AL++
Sbjct: 305 NYGTFNGQYALRV 317