Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., flagellar motor switch protein FliM from Burkholderia phytofirmans PsJN

 Score =  296 bits (757), Expect = 7e-85
 Identities = 137/325 (42%), Positives = 215/325 (66%), Gaps = 4/325 (1%)

Query: 3   DLLSQDEIDALLHGV--DDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           + +SQ+E+DALL GV  +   E  + D VG   R Y+ ++Q+RIVRGRMP LEI+N+RFA
Sbjct: 5   EFMSQEEVDALLKGVTGETDSEAEQSDRVG--VRPYNIATQERIVRGRMPGLEIINDRFA 62

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R LR+ +FN MRR+AE+S+  V++ K+ E+   L +PT+LN+V   PL+GT+L   +  L
Sbjct: 63  RLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNL 122

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF +VDN FGGDGRFH ++EGR+FT TE+RI+  LL ++F++Y  +W  V  ++F+Y+ S
Sbjct: 123 VFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRS 182

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           E++   AN+ +P E+V++  F IE    GG  HI MPYSMIEPIR++L + +Q +  + D
Sbjct: 183 EMHTQFANVATPNEIVIVTQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVD 242

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
            RW + L  ++   +V   A + +  +T + ++N + GD++PI +PE+I  +++ +P   
Sbjct: 243 RRWVRVLSQQVQAAEVELTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKVDGVPVME 302

Query: 301 CKMGRSRDNLALKIYEKIPRPETVK 325
           C  G      AL++ + I   ET+K
Sbjct: 303 CGYGIFNGQYALRVQKMISAAETMK 327