Pairwise Alignments

Query, 124 a.a., flagellar motor switch protein FliN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 152 a.a., flagellar motor switch protein from Pseudomonas fluorescens FW300-N2C3

 Score =  141 bits (356), Expect = 3e-39
 Identities = 80/141 (56%), Positives = 99/141 (70%), Gaps = 24/141 (17%)

Query: 5   DDWAAAMAEQALEEANAVGLDELV---------------------DDSQPISKAEAAKLD 43
           D+WAAA+ E    +A    +D L+                       ++P++  +   LD
Sbjct: 15  DEWAAALEETG--DAGQADIDALLAADSGNQGSSRLTMEEFGSVPKSNEPVT-LDGPNLD 71

Query: 44  TILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVN 103
            ILDIPV+ISMEVG + I+IRNLLQLNQGSV+ELDR+AGEPLDV+VNGTLIAHGEVVVVN
Sbjct: 72  VILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVN 131

Query: 104 DKFGIRLTDVISQTERIKKLK 124
           +KFGIRLTDVIS +ERIKKL+
Sbjct: 132 EKFGIRLTDVISPSERIKKLR 152