Pairwise Alignments

Query, 124 a.a., flagellar motor switch protein FliN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 155 a.a., flagellar motor switch protein FliN from Pseudomonas fluorescens SBW25-INTG

 Score =  141 bits (355), Expect = 4e-39
 Identities = 82/145 (56%), Positives = 99/145 (68%), Gaps = 31/145 (21%)

Query: 5   DDWAAAMAEQALEEANAVGLDEL-------------------------VDDSQPISKAEA 39
           D+WAAA     LEE   VG D++                           ++ P++  + 
Sbjct: 17  DEWAAA-----LEETGDVGQDDIDALLAADAATAPAGKRLPMEEFGSVPKNNDPVT-LDG 70

Query: 40  AKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEV 99
             LD ILDIPV+ISMEVG + I+IRNLLQLNQGSV+ELDR+AGEPLDV+VNGTLIAHGEV
Sbjct: 71  PNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEV 130

Query: 100 VVVNDKFGIRLTDVISQTERIKKLK 124
           VVVN+KFGIRLTDVIS +ERIKKL+
Sbjct: 131 VVVNEKFGIRLTDVISPSERIKKLR 155