Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 241 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  257 bits (656), Expect = 2e-73
 Identities = 130/229 (56%), Positives = 171/229 (74%), Gaps = 3/229 (1%)

Query: 11  DNKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETF 70
           D +  +++QYAPLVKRIA+HLLARLPASVQ+DDL+QAGM+GLLEA+ K+D GKGA FET+
Sbjct: 10  DAQYRLIDQYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEAAKKYDAGKGASFETY 69

Query: 71  AGIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDE 130
           AGIRIRG MLDE+R+GDW PRSVHRN+R +++AI  +E   GRDA+D E+A +L ++LDE
Sbjct: 70  AGIRIRGTMLDEVRKGDWAPRSVHRNSRMVSEAIRTIEAKTGRDAKDHEVAAELKLSLDE 129

Query: 131 YHHILNDVSVGKIIGIEDL---GVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILP 187
           Y+ IL D    ++   +DL   G   ++   + ++    F  L + +F  ALV+AI  LP
Sbjct: 130 YYGILGDTLGSRLFSFDDLLQEGEHGELQEDAASLHPEPFRDLEDERFQQALVDAIANLP 189

Query: 188 ERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQW 236
           ER+ LVLSLYYDE LNLKEIG +L VSESRVSQ+ SQ   RL+ +L +W
Sbjct: 190 EREKLVLSLYYDEELNLKEIGQVLGVSESRVSQLHSQCAARLRARLGEW 238