Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 246 a.a., RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG from Pseudomonas syringae pv. syringae B728a

 Score =  254 bits (648), Expect = 1e-72
 Identities = 129/232 (55%), Positives = 173/232 (74%), Gaps = 3/232 (1%)

Query: 8   TCLDNKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKF 67
           T  +++  ++E+YAPLVKRIA+HLLARLPASVQ++DL+QAGM+GLLE S+K+D  KGA F
Sbjct: 12  TSRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASF 71

Query: 68  ETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMT 127
           ET+AGIRIRGAMLDE+R+GDW PRSVHRN R ++ AI  +E   GRDA+D E+A +L ++
Sbjct: 72  ETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQLS 131

Query: 128 LDEYHHILNDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEV---LAETQFHSALVEAIK 184
           LD+Y+ ILND    ++   +DL    D     ++ + G+ E    L + +F +AL +AI 
Sbjct: 132 LDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDERFQAALADAIA 191

Query: 185 ILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQW 236
            LPER+ LVL+LYYDE LNLKEIG +L VSESRVSQ+ SQ   RL+G+L +W
Sbjct: 192 NLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEW 243