Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 239 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  384 bits (987), Expect = e-112
 Identities = 194/237 (81%), Positives = 216/237 (91%)

Query: 1   MNKAAAYTCLDNKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFD 60
           MNKAAAYT +++KTSIVEQYAPLVKRIAHH+LARLPASVQLDDLLQAGM+GLLEAS+KFD
Sbjct: 1   MNKAAAYTSMESKTSIVEQYAPLVKRIAHHMLARLPASVQLDDLLQAGMIGLLEASAKFD 60

Query: 61  GGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEI 120
           GGKGAKFETFAGIRIRGAMLDEIR+GDWVPRSVHRN RR+AQ IDELEQ LGRDARDTEI
Sbjct: 61  GGKGAKFETFAGIRIRGAMLDEIRKGDWVPRSVHRNQRRVAQVIDELEQELGRDARDTEI 120

Query: 121 AEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHSALV 180
           AE+LDM+++EYHHILNDVSVGKIIGIEDLGVS D+L      ++  ++ LA++QF  AL 
Sbjct: 121 AERLDMSMEEYHHILNDVSVGKIIGIEDLGVSHDVLVPDGEQTNDIYDDLAQSQFQQALA 180

Query: 181 EAIKILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQWT 237
           +AI+ LPERDALVLSLYYDEALNLKEIGAIL+VSESRV QI SQAMLRLKGKLK WT
Sbjct: 181 DAIRQLPERDALVLSLYYDEALNLKEIGAILDVSESRVCQIHSQAMLRLKGKLKHWT 237