Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 246 a.a., RNA polymerase sigma factor, FliA/WhiG family from Dechlorosoma suillum PS

 Score =  199 bits (506), Expect = 4e-56
 Identities = 107/228 (46%), Positives = 156/228 (68%), Gaps = 9/228 (3%)

Query: 12  NKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFA 71
           +K  +V+++APLVKRIA+HL+ARLP+SVQ++DL+Q GM+GLL+A ++F+ G GA+FET+A
Sbjct: 9   DKEQLVQRFAPLVKRIAYHLMARLPSSVQVEDLVQNGMIGLLDAMNRFETGHGAQFETYA 68

Query: 72  GIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEY 131
             RIRGAMLD +R  DW+PR + R+ RRI QAI +LEQ  GR   + E+AE +DM+L +Y
Sbjct: 69  AQRIRGAMLDGLRENDWLPRGLRRDLRRIEQAITQLEQEHGRVPTEKELAEAMDMSLADY 128

Query: 132 HHILNDVSVGKIIGIEDL------GVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKI 185
             +L +    +++  ED       G  E  LT  D        +L E      LV +I  
Sbjct: 129 QKMLGEARGHQLLYFEDFTEEGEEGFLERHLTDHD---ADPLRLLEEQSLRQTLVASIGE 185

Query: 186 LPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKL 233
           LPER+ L+++LYY++ LNL+EIG ++ V+ESRV Q+ SQA+ RL+ K+
Sbjct: 186 LPEREKLMMALYYEQDLNLREIGEVMGVTESRVCQLHSQAIARLRAKV 233