Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 265 a.a., RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  135 bits (340), Expect = 8e-37
 Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 13/225 (5%)

Query: 16  IVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRI 75
           IV  YAP V+ +A  L A+LP +V+L++L+ AG +GL+EA  KF    G +FET+A  RI
Sbjct: 39  IVRHYAPKVRFLALRLKAKLPRNVELNELISAGTLGLMEALGKFRPQLGIRFETYAESRI 98

Query: 76  RGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEYHHIL 135
           RGAMLDE+RR DW PRS+ +  R++ +AI  +E   GR   + E+ +     LD+     
Sbjct: 99  RGAMLDELRRLDWFPRSLRQRVRQLDEAIQRIEHEKGRHPTEAELQDATG--LDQ----- 151

Query: 136 NDVSVGKIIGIEDLGVSEDILTTSDNVSDGT------FEVLAETQFHSALVEAIKILPER 189
            DV +G       L +S D +  S     G       F+  A  +    +   I  L  R
Sbjct: 152 KDVRLGLEALQNQLCLSLDAIQDSLAPDTGVQGEGEPFQTTATQELIERVAGLIDELTPR 211

Query: 190 DALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLK 234
           + LVLSLYY + LN++E   ++ ++E RVSQ+ SQA+ RL+ + +
Sbjct: 212 EKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALNRLRKEFR 256