Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 247 a.a., flagellar biosynthesis sigma factor FliA from Marinobacter adhaerens HP15

 Score =  264 bits (674), Expect = 1e-75
 Identities = 134/221 (60%), Positives = 169/221 (76%)

Query: 16  IVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRI 75
           ++EQ+APLVK+IA HL+ARLPASVQL+DL+QAGM+GLLEA+ ++   KGA FET+AGIRI
Sbjct: 21  LIEQHAPLVKKIALHLMARLPASVQLEDLMQAGMIGLLEAAQRYSSTKGATFETYAGIRI 80

Query: 76  RGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEYHHIL 135
           RGAM+DEIR+GDWVPRSVHRN RRI+QAI  +E  LGR+A D E+AE+L M L EYH  L
Sbjct: 81  RGAMVDEIRKGDWVPRSVHRNARRISQAIKAVEDRLGREAHDQEVAEELGMGLPEYHSYL 140

Query: 136 NDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILPERDALVLS 195
           +D + G++  +++L  S ++        D   E L+   F  +L EAI+ LPER+ LVLS
Sbjct: 141 SDSNSGRLFSLDELNESGELPIEQTETQDNPLEGLSSDAFRRSLAEAIEDLPEREKLVLS 200

Query: 196 LYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQW 236
           LYY E LNLKEIGA+L VSESRVSQI SQA LRL+G+L  W
Sbjct: 201 LYYQEELNLKEIGAVLGVSESRVSQIHSQAALRLRGRLSDW 241