Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 240 a.a., RNA polymerase sigma factor FliA from Pantoea sp. MT58

 Score =  196 bits (497), Expect = 4e-55
 Identities = 106/226 (46%), Positives = 154/226 (68%), Gaps = 5/226 (2%)

Query: 12  NKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFA 71
           +K S+ ++Y PLV+  A  L  RLPASV+LDDLLQAG +GLL A  ++D  +G  F T+A
Sbjct: 12  DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71

Query: 72  GIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEY 131
             RIRGAMLDE+R  DW PRSV RN R +A A+  +EQ LGR A + E+A++L+++++EY
Sbjct: 72  VQRIRGAMLDELRSRDWAPRSVRRNAREVAGAMHRVEQSLGRSASEQEVAQQLNVSMEEY 131

Query: 132 HHILNDVSVGKIIGI----EDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILP 187
             IL D +  ++       E+ G S +++T     ++   ++L E      ++EAI+ LP
Sbjct: 132 RQILLDTNNSQLFSYDEYREEHGDSAELVTEGHEEANPLHQLL-EGSLRERVIEAIEALP 190

Query: 188 ERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKL 233
           +R+ +VL+LYY E LNLKEIGA+L+V ESRVSQ+ SQA+ RL+ +L
Sbjct: 191 DREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRARL 236