Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 244 a.a., flagellar biosynthesis sigma factor from Herbaspirillum seropedicae SmR1

 Score =  202 bits (515), Expect = 4e-57
 Identities = 105/230 (45%), Positives = 163/230 (70%), Gaps = 9/230 (3%)

Query: 13  KTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAG 72
           K  ++EQ+APLVK++AH L A+LP SV++DDL+QAGMMGLL+A ++++   GA+FET+A 
Sbjct: 10  KNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETHGAQFETYAV 69

Query: 73  IRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEYH 132
            RIRGAMLDE+R  DW+PRS+ +N R++ +A+  L Q LGR  ++ E+A+ + ++L++Y 
Sbjct: 70  QRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQHMQISLEDYQ 129

Query: 133 HILNDVSVGKIIGIEDL----GVSEDIL---TTSDNVSDGTFEVLAETQFHSALVEAIKI 185
            +L++    ++I  ED     G  E  L    TSD  SD   + L    F  A+V++IK 
Sbjct: 130 SLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSD--SDDPLQNLINGGFREAVVDSIKA 187

Query: 186 LPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQ 235
           LPER+ ++++LYY++ +NLKEIGA++ VSESRV Q+ SQA+ R++  L++
Sbjct: 188 LPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLRE 237