Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 253 a.a., RNA polymerase sigma factor FliA from Ralstonia sp. UNC404CL21Col

 Score =  195 bits (495), Expect = 8e-55
 Identities = 111/234 (47%), Positives = 157/234 (67%), Gaps = 7/234 (2%)

Query: 7   YTCLDNKTSIVEQ--YAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKG 64
           YT    KT   E   YAPLV+RIA+ ++ +LPASV+LDDL+QAGMMGLL+A S+++  +G
Sbjct: 12  YTATGRKTKSDEMATYAPLVRRIANQMMVKLPASVELDDLIQAGMMGLLDALSRYEETQG 71

Query: 65  AKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKL 124
            +FE +A  RIRGA+LDE+R  DW+PR + RN R I QAI +L+Q  GR   +TEIA  L
Sbjct: 72  VQFEFYAAQRIRGAILDELRGSDWLPRGLRRNARTIEQAIQKLQQQKGRAPTETEIAAAL 131

Query: 125 DMTLDEYHHILNDVSVGKIIGIEDLGVSEDILTTSDN---VSDGT-FEVLAETQFHSALV 180
            M+L EY   L D+   +++  ED    ED     +N    +D T  + L +     ++V
Sbjct: 132 GMSLAEYQKQLVDLQGSQLLYYEDFD-REDADAFIENRAPENDATPLDQLLDHDLRESVV 190

Query: 181 EAIKILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLK 234
            AI+ LPER+ L++SLYY++ LNL+EIGA++ VSESRV QI SQA+ R++ +L+
Sbjct: 191 AAIEALPEREKLMMSLYYEQDLNLREIGAVMGVSESRVCQIHSQAIARIRSRLR 244