Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

 Score =  211 bits (537), Expect = 1e-59
 Identities = 109/227 (48%), Positives = 157/227 (69%), Gaps = 3/227 (1%)

Query: 12  NKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFA 71
           ++  ++ +YAPLV+R+   L+A++PASV LDDL+QAGM+GLL+A+ ++   +GA+FET+A
Sbjct: 9   SQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQGAQFETYA 68

Query: 72  GIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEY 131
             RIRGAMLDE+R  DW+PRS+ R +R +  A+ ++EQ LGR A +TEIAE L M LDEY
Sbjct: 69  SQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEHLQMPLDEY 128

Query: 132 HHILNDVSVGKIIGIEDLGVSEDILTTSDNV---SDGTFEVLAETQFHSALVEAIKILPE 188
             +L D+   ++I  ED   S D     D            L +    SALVEAI  LP+
Sbjct: 129 QSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALVEAIDRLPD 188

Query: 189 RDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQ 235
           R+ L++SLYY+  +NL+EIGA++EVSESRV Q+ SQA+ RL+ +L++
Sbjct: 189 REKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLRE 235