Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 619 a.a., RNA polymerase, sigma 70 subunit, RpoD (RefSeq) from Shewanella sp. ANA-3

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 13  KTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAG 72
           K  +VE    LV  IA     R    +Q  DL+Q G +GL++A  KF+  +G KF T+A 
Sbjct: 382 KKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 438

Query: 73  IRIRGAMLDEI---RRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLD 129
             IR A+   I    R   +P  +     ++ +   ++ Q +GR+    E+AE++ M  D
Sbjct: 439 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPED 498

Query: 130 EYHHILNDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAET----QFHSALVEAIKI 185
           +   +L  ++   I     +G  ED     D + D T E+  ++       SA  E +  
Sbjct: 499 KIRKVLK-IAKEPISMETPIGDDED-SHLGDFIEDTTLELPLDSATSESLKSATHEVLAG 556

Query: 186 LPERDALVLSLYYDEALN----LKEIGAILEVSESRVSQILSQAMLRLK 230
           L  R+A VL + +   +N    L+E+G   +V+  R+ QI ++A+ +L+
Sbjct: 557 LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 605