Pairwise Alignments

Query, 127 a.a., chemotaxis protein CheY (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 523 a.a., response regulator receiver protein (RefSeq) from Shewanella sp. ANA-3

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 45/115 (39%), Positives = 70/115 (60%)

Query: 5   MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKGDFDFVVTDWNMPGMQG 64
           M+ LIV+D   +R+I+   LR LGF    +AD G  AL MLQ+   D ++ DW+MP   G
Sbjct: 6   MQCLIVEDMDALRKIMAEQLRQLGFGQVLQADCGRQALDMLQRMHIDLLLLDWSMPDGHG 65

Query: 65  IDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKL 119
            +LL+++R  D  + LP+++VTA A R  +  A + GV   + KPF + TL+ ++
Sbjct: 66  QELLESLRQQDKWQDLPIIIVTANAHRSLVEVAMKYGVLDIIAKPFNSKTLQARV 120



 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 7   ILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKGDF-DFVVTDWNMPGMQGI 65
           +L+VDD       +  LL D        A DG   L + Q     D V+ D  MP M G 
Sbjct: 158 VLVVDDMPDNLAFMAGLLND--DYKVLFAKDGKAGLKICQSATPPDVVLLDVMMPEMDGH 215

Query: 66  DLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKIFER 125
            +L+A+R +     +PV+ V+A  + E  +   + G   Y+ KP     LK KL  +  +
Sbjct: 216 QVLQALRTEPRSAEIPVIFVSALGEVEHHLQGLRGGAIDYLTKPVQPEILKLKLANVLAQ 275

Query: 126 L 126
           +
Sbjct: 276 V 276