Pairwise Alignments

Query, 340 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., nucleoside-diphosphate-sugar epimerase from Dechlorosoma suillum PS

 Score =  137 bits (345), Expect = 4e-37
 Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 29/339 (8%)

Query: 19  LITGVAGFIGSNLLEQLLKLNQTVIGLDNFATGRQHNLDEVQSLVTSEQWMRFSFINGDI 78
           L+TG AGFIG +  ++LL+    V+G+DN     + +L E + L     +  F F+  DI
Sbjct: 4   LVTGAAGFIGMHTAQRLLERGDEVVGVDNLNDYYEVSLKEAR-LARLAAYPNFRFVRLDI 62

Query: 79  RDYAICEAV--VNGVDYVLHQAALGSVPRSIADPITTNAANITGFLNMLQAAKEAEVKSF 136
            D    + +    G   V+H AA   V  S+A+P     +N+ GF+N+L+  + A+ +  
Sbjct: 63  ADSQGMQELFAAEGFQRVVHLAAQAGVRYSLANPHAYAQSNLVGFVNVLEGCRHAQAEHL 122

Query: 137 TYAASSSTYGDHPALPKVEQN-IGNPLSPYAVTKYVNELYASVYARTYGFETIGLRYFNV 195
            YA+SSS YG +  +P  E + + +P+S YA TK  NEL A  Y+  +G  T GLR+F V
Sbjct: 123 VYASSSSVYGGNRKMPFSEHDAVDHPVSLYAATKKSNELMAHTYSHLFGLPTTGLRFFTV 182

Query: 196 FGRRQDPNGAYAAVIPKWTSSMIKGEDVFINGDGETSRDFCYIDNVVQ------------ 243
           +G    P G     +  +T ++++G  + +   G+  RDF YID++V+            
Sbjct: 183 YG----PWGRPDMALFLFTRAILEGRPIDVFNHGKMQRDFTYIDDIVEGVVRVLDQPARA 238

Query: 244 ----MNILAATAASEAKNEVYNVAVGDRTTLNDLYFAIKDSLNANGINVNQNPNYRDFRA 299
                 +    A S     ++N+       L     A++ +L         N  +   + 
Sbjct: 239 SESFDGLAPDPACSNVPYRLFNIGNDQPVDLLAFIEALEGALGQVA-----NKRFLPLQD 293

Query: 300 GDVRHSQADVSKAVTRLGYQYTHKILEGISEAMPWYKEF 338
           GDV  + AD +     +G+     + +G+ + + WY+++
Sbjct: 294 GDVPATWADTALLGQAVGFAPKTSVQDGVGQFVRWYRDY 332