Pairwise Alignments

Query, 340 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 342 a.a., NAD-dependent epimerase/dehydratase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  423 bits (1088), Expect = e-123
 Identities = 211/337 (62%), Positives = 256/337 (75%), Gaps = 2/337 (0%)

Query: 1   MTRYEQIKQELLNSPKTWLITGVAGFIGSNLLEQLLKLNQTVIGLDNFATGRQHNLDEVQ 60
           MTRY  + QEL  +P+TWL+TGVAGFIGSNLLE LL   Q V+GLDNFATG Q NLD V+
Sbjct: 1   MTRYTALMQELEAAPRTWLVTGVAGFIGSNLLETLLMHGQKVVGLDNFATGYQRNLDMVR 60

Query: 61  SLVTSEQWMRFSFINGDIRDYAICEAVVNGVDYVLHQAALGSVPRSIADPITTNAANITG 120
            +V ++ W  F F  GDIR+   C  V  GVD+VLHQAALGSVPRSI DPI  N +NI+G
Sbjct: 61  EIVGADLWRNFRFKEGDIRNLEHCREVCEGVDHVLHQAALGSVPRSIEDPILANESNISG 120

Query: 121 FLNMLQAAKEAEVKSFTYAASSSTYGDHPALPKVEQNIGNPLSPYAVTKYVNELYASVYA 180
           F+NM+ AA++A+VK+F YAASSSTYGD P LPKVE  IG PLSPYAVTKYVNELYA V+A
Sbjct: 121 FVNMMVAARDAKVKTFVYAASSSTYGDEPTLPKVEDKIGKPLSPYAVTKYVNELYADVFA 180

Query: 181 RTYGFETIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIKGEDVFINGDGETSRDFCYIDN 240
             YG + IGLRYFNVFG+RQDP GAYAAVIP+W +S+++GE VFINGDGETSRDFCYIDN
Sbjct: 181 TCYGMKAIGLRYFNVFGKRQDPFGAYAAVIPQWFASLLRGETVFINGDGETSRDFCYIDN 240

Query: 241 VVQMNILAATAASEAK-NEVYNVAVGDRTTLNDLYFAIKDSLNANGIN-VNQNPNYRDFR 298
            VQ N+LAATA  EA  N VYNVA G+RT LN L+  I++ ++ +        P +R+FR
Sbjct: 241 CVQANLLAATATDEAALNTVYNVAFGERTDLNQLFDLIREEVSRHKPEAATAKPEHREFR 300

Query: 299 AGDVRHSQADVSKAVTRLGYQYTHKILEGISEAMPWY 335
            GDVRHS AD+S+A TRLGY+  + + +G+  +  WY
Sbjct: 301 FGDVRHSLADISRAHTRLGYEPVYSVRQGLRLSGDWY 337