Pairwise Alignments

Query, 340 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., NAD-dependent epimerase/dehydratase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  137 bits (344), Expect = 5e-37
 Identities = 98/342 (28%), Positives = 166/342 (48%), Gaps = 35/342 (10%)

Query: 19  LITGVAGFIGSNLLEQLLKLNQTVIGLD--NFATGRQHNLDEVQSLVTSEQWMRFSFING 76
           L+TG AGFIG +L  + L+   TV+GLD  N     Q   D ++ L   E +  F+F   
Sbjct: 4   LVTGAAGFIGYHLSRRFLEAGHTVVGLDCLNDYYDVQLKKDRLKQL---EPYPGFAFAQL 60

Query: 77  DIRDYAICEAVVNGVDY--VLHQAALGSVPRSIADPITTNAANITGFLNMLQAAKEAEVK 134
           D+ D A  +A+  G  +  V++ AA   V  S+ +P +   +N+ GF N+L+  +   V+
Sbjct: 61  DMADDAGMDALFAGQKFTHVVNLAAQAGVRYSLKNPRSYVQSNLVGFGNILEGCRHNGVQ 120

Query: 135 SFTYAASSSTYGDHPALP-KVEQNIGNPLSPYAVTKYVNELYASVYARTYGFETIGLRYF 193
              YA+SSS YG + A+P  V  N+ +P+S YA +K  NEL A  Y+  Y   T GLR+F
Sbjct: 121 HLVYASSSSVYGLNTAMPFSVHHNVDHPISLYAASKKANELMAHTYSHLYRLPTTGLRFF 180

Query: 194 NVFGRRQDPNGAYAAVIPKWTSSMIKGEDVFINGDGETSRDFCYIDNVVQMNILAAT--- 250
            V+G    P G     +  +T ++++G+ + +  +G   RDF YI ++V+  ++  T   
Sbjct: 181 TVYG----PWGRPDMALYLFTRAILEGKPINVFNEGRMRRDFTYIGDIVE-GVVRVTERT 235

Query: 251 --------------AASEAKNEVYNVAVGDRTTLNDLYFAIKDSLNANGINVNQNPNYRD 296
                         + S A   +YN+   +   L      ++D L    +      N   
Sbjct: 236 PQPNPEWRGDAPDPSTSPAPYRIYNIGNNNAVELGRFIEILEDCLGRKAVR-----NLMP 290

Query: 297 FRAGDVRHSQADVSKAVTRLGYQYTHKILEGISEAMPWYKEF 338
            + GDV  + ADV   +   G++    + +GI   + W++++
Sbjct: 291 MQPGDVEATYADVDDLIRDTGFKPHTPLEQGIEAFVRWFRDY 332