Pairwise Alignments

Query, 340 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., NAD-dependent epimerase from Klebsiella michiganensis M5al

 Score =  148 bits (374), Expect = 2e-40
 Identities = 102/340 (30%), Positives = 164/340 (48%), Gaps = 30/340 (8%)

Query: 18  WLITGVAGFIGSNLLEQLLKLNQTVIGLDNFATGRQHNLDEVQSLVTSEQWMRFSFINGD 77
           +L+TG AGFIG +  ++LL+    V+GLDN       NL   Q+ +   Q   FSF   D
Sbjct: 3   FLVTGAAGFIGFHTCKRLLEAGHEVVGLDNMNDYYDVNLK--QARLDLLQSPLFSFHKID 60

Query: 78  IRDY-AICEAVVNG-VDYVLHQAALGSVPRSIADPITTNAANITGFLNMLQAAKEAEVKS 135
           + D   I     N   + V+H AA   V  S+ +P     AN+ G+LN+L+  +   V+ 
Sbjct: 61  LADREGIARLFANEKFNRVIHLAAQAGVRYSLENPFAYADANLIGYLNILEGCRHNNVEH 120

Query: 136 FTYAASSSTYGDHPALP-KVEQNIGNPLSPYAVTKYVNELYASVYARTYGFETIGLRYFN 194
             YA+SSS YG +  +P   + ++ +P+S YA TK  NEL A  Y+  YG  T GLR+F 
Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFT 180

Query: 195 VFGRRQDPNGAYAAVIPKWTSSMIKGEDVFINGDGETSRDFCYIDNVVQMNI-------- 246
           V+G    P G     + K+T +M++G+ + +   G+  RDF YID++V+  +        
Sbjct: 181 VYG----PWGRPDMALFKFTKAMLEGKPIDVYNYGKMKRDFTYIDDIVEAIVRMQDIIPQ 236

Query: 247 --------LAATAASEAKNEVYNVAVGDRTTLNDLYFAIKDSLNANGINVNQNPNYRDFR 298
                     + A S A   VYN+       L D   A+++++      +    N    +
Sbjct: 237 PNPEWTVETGSPADSSAPYRVYNIGNSSPVELMDYITALEEAM-----GMVAEKNMMPIQ 291

Query: 299 AGDVRHSQADVSKAVTRLGYQYTHKILEGISEAMPWYKEF 338
            GDV  + AD       +G++    + +G+   + WYK +
Sbjct: 292 PGDVLETSADTKPLYDAVGFRPQTTVRQGVKNFVDWYKAY 331