Pairwise Alignments

Query, 340 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., NAD-dependent epimerase/dehydratase (RefSeq) from Shewanella sp. ANA-3

 Score =  147 bits (372), Expect = 3e-40
 Identities = 101/342 (29%), Positives = 160/342 (46%), Gaps = 29/342 (8%)

Query: 18  WLITGVAGFIGSNLLEQLLKLNQTVIGLDNFATGRQHNLDEVQSLVTSEQWMRFSFINGD 77
           +L+TG AGFIG+ + E+L      V+G+DN        L ++  L   E    F FI  D
Sbjct: 3   YLVTGAAGFIGAKVSERLCAQGHEVVGIDNLNDYYDVGL-KLARLAPLEALSNFRFIKLD 61

Query: 78  I--RDYAICEAVVNGVDYVLHQAALGSVPRSIADPITTNAANITGFLNMLQAAKEAEVKS 135
           +  RD         G   V+H AA   V  S+ +P+    +N+ G L +L+  +  +++ 
Sbjct: 62  LADRDGIATLFAEQGFRRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIEH 121

Query: 136 FTYAASSSTYGDHPALP-KVEQNIGNPLSPYAVTKYVNELYASVYARTYGFETIGLRYFN 194
             YA+SSS YG +  +P   E ++ +P+S YA TK  NEL +  Y+  Y   T GLR+F 
Sbjct: 122 LVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFT 181

Query: 195 VFGRRQDPNGAYAAVIPKWTSSMIKGEDVFINGDGETSRDFCYIDNVVQMNI-------- 246
           V+G    P G     + K+T +++ G+ + +   G+ SRDF YID++V+  I        
Sbjct: 182 VYG----PWGRPDMALFKFTKAILAGDIIDVYNHGDLSRDFTYIDDIVEGIIRVQDKPPR 237

Query: 247 --------LAATAASEAKNEVYNVAVGDRTTLNDLYFAIKDSLNANGINVNQNPNYRDFR 298
                       A S A   V+N+  G    L D   A++ +L      +  N  +   +
Sbjct: 238 PTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALESAL-----GIEANKQFLPMQ 292

Query: 299 AGDVRHSQADVSKAVTRLGYQYTHKILEGISEAMPWYKEFLA 340
            GDV  + AD       +GY+    I  G+   + WY+ F A
Sbjct: 293 PGDVHSTWADTEDLFKAVGYKPQVDINTGVGRFVEWYRAFYA 334