Pairwise Alignments

Query, 130 a.a., DNA-binding protein, H-NS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 155 a.a., DNA-binding protein H-NS from Xanthomonas campestris pv. campestris strain 8004

 Score = 40.8 bits (94), Expect = 8e-09
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 23/124 (18%)

Query: 25  ELRDLAAKLDKILVERESMEAEELQAIAARNAKIEEIRQQM----EAVGLSIDDLGGVAV 80
           +L  L+AK    L++     A++ Q + A+ A I ++R Q+    +A G SI++L G A 
Sbjct: 4   DLTGLSAKQLGALIKN----AKKQQTVVAKRAPIAKVRTQLTRAAKAQGYSIEELFGAAA 59

Query: 81  KA------SSKKRAPRPA--------KYQIEVDGEVIQWTGQGRMPTVFKNEVNKGRSMD 126
            A      ++ K  PR          KY+   + +   WTG+G+ P         G+ ++
Sbjct: 60  SAGPGRPAAAGKPGPRAGRKLGKVAPKYRNPANAQET-WTGRGKQPRWLAELTAAGKKVE 118

Query: 127 DFLI 130
           DFLI
Sbjct: 119 DFLI 122