Pairwise Alignments

Query, 609 a.a., ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  235 bits (600), Expect = 3e-66
 Identities = 179/584 (30%), Positives = 286/584 (48%), Gaps = 32/584 (5%)

Query: 31  YTKGYELPLILMSVLTAFIAMLEVSLFGFMGQLVDWLVKKSPETLYQDEGSTLILMGVMV 90
           Y + Y+  L++ ++     A  +  +   +  L+D       E     E + L ++  M+
Sbjct: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLD-------EGFGNAESNFLRILPFMI 71

Query: 91  LVVMPLLVL--FHALIMHQTLLGNYPMSIRWLAHRYLLKQSVSFYQNDFAGRIATKVMQT 148
           L +M +  L  F +      + GN  M +R     + +   V F+  +  G + +++   
Sbjct: 72  LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYD 131

Query: 149 SLAVRETVMKLLDVLVYILVYFTSMLVMVASADVRLVIPMLIWLALYIGLQWYFVP-RLK 207
           S  V     + L  +V        +L ++     +L + +LI +A  +     FV  R +
Sbjct: 132 SEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL-VLIVVAPVVAFAISFVSKRFR 190

Query: 208 TVSTEQADARSTMTGRIVDSYTNITTVKLFAHTD---KEADYAKASMRSFLDTVYRQMRL 264
            +S     A   +T            V  +   +   K  D    SMR       + M+L
Sbjct: 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ------QTMKL 244

Query: 265 VTGISVSVQIINYMLAFSIAAVSIALWSDNA---ISVGAIAIAVSLALRLNGMSQWIMWE 321
           V+  S++  +I  + + ++ AV      D+    ++ G   +  S    L    +  +  
Sbjct: 245 VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLK-ALTS 303

Query: 322 ISSLFENIGTVTDGMNTLSKTTLIQDSPDANTLVVKQGQIDFNQVSFHY-GEDAGVIDEL 380
           ++S F+        +  L      +D+       V  G++D   V+F Y G++   +  +
Sbjct: 304 VTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVN-GEVDVKDVTFTYQGKEKPALSHV 362

Query: 381 NLNIKAGEKVGLVGRSGAGKSTLVNLLMRFYDVEKGHICIDGQDIKAVKQDSLRSQIGMV 440
           + +I  G+ V LVGRSG+GKST+ NL  RFYDV+ G IC+DG D++  K  +LR    +V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422

Query: 441 TQDTSLLHRTIRENILYGNPGA-SEIQLEHAIKQAQAHDFINELTDPNGNHGLDAQVGER 499
           +Q+  L + TI  NI Y   G  +  Q+E A +QA A +FI  +       GLD  +GE 
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----GLDTVIGEN 477

Query: 500 GVKLSGGQRQRVAIARVLLKNAPILLLDEATSALDSEVEAAIQESLYELMQGKTVIAIAH 559
           G  LSGGQRQRVAIAR LL++AP+L+LDEATSALD+E E AIQ +L EL + KTV+ IAH
Sbjct: 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537

Query: 560 RLSTIAAMDRLIVLDQGRIVEQGTHQELIAAGGIYAQLWAHQTG 603
           RLSTI   D ++V+D+G I+E+G H +L+A  G YAQL   Q G
Sbjct: 538 RLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFG 581