Pairwise Alignments

Query, 609 a.a., ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 599 a.a., lipid A export ATP-binding/permease protein MsbA from Phaeobacter inhibens DSM 17395

 Score =  251 bits (641), Expect = 6e-71
 Identities = 167/564 (29%), Positives = 298/564 (52%), Gaps = 30/564 (5%)

Query: 49  IAMLEVSLFGFMGQLVDWLVKKSPETLYQDEGSTLILMGVMVLVVMPLLV----LFHALI 104
           +A L + L   +   +   V++  +     E + L       LV+  LL     L +AL+
Sbjct: 39  MATLALVLTAGLSLTLPLAVRRVVDNFRISEAALLNQYFAAALVIAALLAVGTGLRYALV 98

Query: 105 MHQTLLGNYPMS-IRWLAHRYLLKQSVSFYQNDFAGRIATKVMQTSLAVRETVMKLLDVL 163
              T LG   ++ IR      ++  S +F++    G + +++   +  ++  +   + + 
Sbjct: 99  ---TRLGERVVADIRKAVFDRVIGMSPAFFEQIMTGEVLSRITTDTTLIQSVLGSSVSIA 155

Query: 164 VYILVYFTSMLVMVASADVRL------VIPMLIWLALYIGLQWYFVPRLKTVSTEQADAR 217
           +  ++ F   LV++     +L      ++P +I   L +G       RL+ +S E  D  
Sbjct: 156 LRNMLIFIGGLVLMLLTSAKLTSLVLLIVPAVIVPILVLGR------RLRKISRENQDWI 209

Query: 218 STMTGRIVDSYTNITTVKLFAH-TDKEADYAKASMRSFLDTVYRQMRLVTGISVSVQIIN 276
           +  +G   ++   + TV+ + H     +++++ +  +F D   R+++    ++V V  + 
Sbjct: 210 AASSGNAGEALGAVQTVQAYTHEVASRSEFSRLTETAF-DVSMRRIQTRAFLTVIVIFLV 268

Query: 277 YMLAFSIAAVSIALWSDNAISVGAIAIAVSLALRLNGMSQWIMWEISSLFENIGTVTDGM 336
           +     +  +         +S G +   V  A+ + G    +    S L    G     +
Sbjct: 269 FSGVVGVLWMGANDVRAGIMSEGTLVQFVIYAVLVAGSVAALSEIWSELQRAAGATERLV 328

Query: 337 NTLSKTTLIQDSPDANTLVVK-QGQIDFNQVSFHYGEDAGV--IDELNLNIKAGEKVGLV 393
             L+    +QD      L    +G+I F+ VSF Y     +  + +++L ++ GE V  V
Sbjct: 329 ELLTAVDQVQDPYAPRALAAPVRGEIRFDDVSFRYPARPQIPALVDVSLTVQPGETVAFV 388

Query: 394 GRSGAGKSTLVNLLMRFYDVEKGHICIDGQDIKAVKQDSLRSQIGMVTQDTSLLHRTIRE 453
           G SGAGK+T++ ++ RFYD   G +C+DG+ ++ +++D  R  I +V QD  +   + R+
Sbjct: 389 GPSGAGKTTIIQMIQRFYDPTSGAVCLDGRPLRDLQRDDFRQHIALVPQDPVIFALSARD 448

Query: 454 NILYGNPGASEIQLEHAIKQAQAHDFINELTDPNGNHGLDAQVGERGVKLSGGQRQRVAI 513
           NI +G PGAS+ ++E A + A AHDFI+ L +     G D+QVGERGV LSGGQ+QR+AI
Sbjct: 449 NIRFGRPGASDAEVEAAARAAAAHDFISALPE-----GYDSQVGERGVMLSGGQKQRIAI 503

Query: 514 ARVLLKNAPILLLDEATSALDSEVEAAIQESLYELMQGKTVIAIAHRLSTIAAMDRLIVL 573
           AR +L++AP+LLLDEATSALD+E E  +Q ++ EL QG+T + +AHRL+T+   DR++V+
Sbjct: 504 ARAILRDAPVLLLDEATSALDAESERLVQAAVDELSQGRTTLIVAHRLATVKKADRIVVM 563

Query: 574 DQGRIVEQGTHQELIAAGGIYAQL 597
           ++GRI+  GTH +L+A  G+YA+L
Sbjct: 564 EEGRIIATGTHDQLVAEDGLYARL 587