Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  359 bits (922), Expect = e-104
 Identities = 191/412 (46%), Positives = 266/412 (64%), Gaps = 11/412 (2%)

Query: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
           SF  LG+ AP+   + + GY +P+P+QA  IPAVLSG+DV+A A TG+GKTA F LPLL+
Sbjct: 2   SFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129
            LS+   A      VR LVL PTRELA Q+A+S  +Y  H    L+    FGGV ++ Q+
Sbjct: 62  LLSQGPRARSKQ--VRALVLTPTRELAAQIAESVTTYGQHL--PLRSAVVFGGVGISPQI 117

Query: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
             L+ G D+LVATPGRLLDL   +A+  +Q+   VLDEADRML +GF  +++++LA LP 
Sbjct: 118 SQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPP 177

Query: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHL--QSEQESTIEQRVITVNREQKTALLAHL 247
           ++Q L+FSATF +E+R L   L++ P+E  +  ++   +T++Q +  V++ +K+A L  L
Sbjct: 178 KRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKL 237

Query: 248 IKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVL 307
           I+Q  W Q L+F   K+  N LA+ L  +GI+A   HG+K+QGART+ L  FK+G++ VL
Sbjct: 238 IQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 308 IATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGV 367
           +ATDIAARG+DID+LP V+NFDLP  P DY+HRIGR+GRAG  G AV+L+S EE      
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLAD 357

Query: 368 IEKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRKQLPAAN 419
           IE+     L R ++ GFE     P   L +     K  G  K  R   P +N
Sbjct: 358 IERLIGKLLPRAEVEGFE-----PTHTLPETNLTPKRHGQHKGPRNPKPKSN 404