Pairwise Alignments

Query, 337 a.a., AcrA/AcrE family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  269 bits (688), Expect = 6e-77
 Identities = 147/328 (44%), Positives = 212/328 (64%)

Query: 1   MTAISRTLFTLLAFSTLTTQAASLETLEVMSKPHANWLTLDASIEAVKAATVSAQTSGRI 60
           M A+S ++  +LA S       S E   V ++  +  + LD  ++ V   +++AQTSGR+
Sbjct: 1   MKALSWSIALVLASSAYAQNQDSNERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRV 60

Query: 61  VKLNYDVNDVVPEGAALLEITSKEQGAELASYEADLAKATALNVEAQAQFKRYTELFPQG 120
           V L  DVND V +   LLEI++ +Q A L + +A LA ATA N EAQAQ  RY +LFP+G
Sbjct: 61  VGLYVDVNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKG 120

Query: 121 AISKGAMDEATANAKAAEQAVSAAKARVIKATESLKYTVVSAPFSGIVTERLVELGETVS 180
           AISK  MD A A A++A+ AV +A+A V +A ESL YT ++AP+ GIVT+R+VELGETV+
Sbjct: 121 AISKDQMDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVA 180

Query: 181 VGQPLLSGFSPSQMRAITQVPQRYIPQLKNAPEFIVRLNDGRELTSQDLTIFSFADPVTH 240
            G PLL GFS  ++R  T++PQRY P + +  +F VR   G +L   + ++FS+ADP +H
Sbjct: 181 PGTPLLRGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSH 240

Query: 241 SYQVRINLPKDEANLQPGTWVKALFKNGEREKIQLPTSALITMNELSSVYLKKGDQFVLT 300
           +++ R+ LP++ A L PG WVK  F  G+RE + +P+SA++   ELS+VY     Q  L 
Sbjct: 241 TFKTRLELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALN 300

Query: 301 QVRVTEPLDGEVEVLAGLKSGDIVAMDA 328
            VR+ +     VEVL+GL+ GD+VA  A
Sbjct: 301 PVRLGQVYGDYVEVLSGLELGDVVATQA 328