Pairwise Alignments

Query, 707 a.a., fatty oxidation complex, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

 Score =  770 bits (1988), Expect = 0.0
 Identities = 403/707 (57%), Positives = 508/707 (71%), Gaps = 12/707 (1%)

Query: 7   FNLTRREDGIAILTMDVPGETMNTLKAEFGPEISEILSEI-KRDSSIRGLVLISGKKDSF 65
           F L+  E   A L +DVPGE MNTL+A F  E+  + + + ++   I+GL++ S K D+F
Sbjct: 7   FQLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKPDNF 66

Query: 66  VAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQ 125
           +AGAD+ ML+ACQ+  +A+AL+ QG  +F +L  L  PVVAAIHG CLGGGLELALAC  
Sbjct: 67  IAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALACDY 126

Query: 126 RVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLV 185
           RVC++D  T LG+PEV LGLLPG GGTQRLPRL+G+  ALD++LTGKQ+R K+A K+G+V
Sbjct: 127 RVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKLGVV 186

Query: 186 NDVVPQTILLQTAVEMA-----LAGKQIAKPVKKSLVNQLLEGTGFGRNIIFDQAAKQVA 240
           +  VP ++LL  A  +          Q+  P+K+    +LL  T  GR +IFDQAAK+  
Sbjct: 187 DACVPHSVLLDVAKRLLEEKGHKKRAQVTLPIKE----KLLANTDLGRKLIFDQAAKKTQ 242

Query: 241 KKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKESEALRSIFFATTEMKK 300
           +KT+GNYPA   I++ ++ G+ KGM  GLE EA  FAELV+++ES+ALRSIFFATTEMKK
Sbjct: 243 QKTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEMKK 302

Query: 301 ETGAEGATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKDINEKGLSNALSYAYKLL 360
           + GA+ A P  V    +LGGGLMG GI+ VT  KAK   R+KD+   G+ NAL+Y YKL 
Sbjct: 303 DLGAD-AKPAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKLF 361

Query: 361 DKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFEDLALKHQMVKDIERECGE 420
           DK  +R+ +T A     M+ ++  T + G    D+V+EAVFEDL LK QMV DIE     
Sbjct: 362 DKQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKP 421

Query: 421 HTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEVIAHAKTSPETIATTVAF 480
            TIFA+NTSSLPI QIA  A RP+N++GLHYFSPVEKMPLVEVI HA TS ETIAT V  
Sbjct: 422 TTIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTL 481

Query: 481 ARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVKFGFPVGPITLL 540
           ARKQGKTPIVV+D AGFYVNRILA YMNEAAQ+L+ G+ +E LD AL+ FGFPVGPITLL
Sbjct: 482 ARKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITLL 541

Query: 541 DEVGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKNGKGFYQYGAASKKKAVDE 600
           DEVG+D+GAKI PIL KELG RF+ P  FD LL D+RKGRK+GKGFY Y   SKKK VD+
Sbjct: 542 DEVGVDIGAKIMPILVKELGPRFQGPDVFDVLLKDNRKGRKSGKGFYTY-KGSKKKEVDK 600

Query: 601 TVYGVLGIKPGVDKEMSAVAERCVVQMLNEAVRCLDAGIIASPRDGDIGAIFGIGFPPFL 660
           +VY +L + P        +A RC++ MLNEAVRCLD GII S RDGD+GAIFGIGFPPFL
Sbjct: 601 SVYKLLKLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFL 660

Query: 661 GGPFHYIDTLGADNLVKILERYQTQYGDRFEPCQRLKAMAAEKARFF 707
           GGPF Y+DTLG   +V+++ ++  +YG+RF PC  L   A    +F+
Sbjct: 661 GGPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707