Pairwise Alignments

Query, 707 a.a., fatty oxidation complex, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 715 a.a., fatty acid oxidation complex subunit alpha FadB from Pseudomonas fluorescens SBW25-INTG

 Score =  449 bits (1156), Expect = e-130
 Identities = 276/721 (38%), Positives = 410/721 (56%), Gaps = 28/721 (3%)

Query: 4   GKTFNLTRREDGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKD 63
           GK   +   E GI  L  D+ GE++N        E+ + +  IK D+SI+G+++ SGK D
Sbjct: 5   GKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSSGK-D 63

Query: 64  SFVAGADIS-------MLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGG 116
            F+ GADI+       + DA   AG+ +A     + +F++ E LN+P VAAI+G  LGGG
Sbjct: 64  VFIVGADITEFVDNFKLPDAELVAGNLEA-----NKIFSDFEDLNVPTVAAINGIALGGG 118

Query: 117 LELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRP 176
           LE+ LA   RV S   K  +G+PEV+LG+ PG GGT RLPRL+G   A++ +  GK+ R 
Sbjct: 119 LEMCLAADFRVMSATAK--IGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENRA 176

Query: 177 KQALKMGLVNDVVPQTILLQTAVEM---ALAGKQIAKPVKKSLVNQLLEGTGFGRNIIFD 233
           + ALK+G V+ VV    L + A+ +   A++G+   K  ++  + +L +     + + F+
Sbjct: 177 EDALKVGAVDAVVAPDKLAEAALNLIKGAISGEFDYKAKRQPKLEKL-KLNAIEQMMSFE 235

Query: 234 QAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKESEALRSIFF 293
            A   VA +   NYPAP + I  +++    G  K LEVEA+ F +L  +  +++L  +F 
Sbjct: 236 TAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFL 295

Query: 294 ATTEMKKETGAEGATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKDINEKGLSNAL 353
              E+KK+  A     R VK+A +LG G+MGGGIA  + +K   P  +KDINE G+   L
Sbjct: 296 NDQELKKKAKAYDEIARDVKQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGL 354

Query: 354 SYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFEDLALKHQMVKD 413
           + A KLL   V +  MT A    ++  +  T  Y      D+VVEAV E+  +K  ++ +
Sbjct: 355 AEAAKLLVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAE 414

Query: 414 IERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEVIAHAKTSPET 473
           +E +  + TI ASNTS++ I  +A+A  RPEN +G+H+F+PV  MPLVEVI   K+S   
Sbjct: 415 VEAQVKDDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELA 474

Query: 474 IATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVKFGFP 533
           +ATTVA+A+K GK PIVV D  GF VNR+L  Y    A+L+  G     +DK + KFG+P
Sbjct: 475 VATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWP 534

Query: 534 VGPITLLDEVGIDVGAKISPILEKELGERFK--APAAFDKLLSDDRKGRKNGKGFYQYGA 591
           +GP  L+D VGID G     ++ +   +R K    +A D L    R G+KNGKGFY Y A
Sbjct: 535 MGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEA 594

Query: 592 ASK---KKAVDETVYGVLGIKPGVDKEMS--AVAERCVVQMLNEAVRCLDAGIIASPRDG 646
             K   KK  D +V+ VL       +E+S   +    ++ +  E VRCL+ GI+ +  + 
Sbjct: 595 DKKGKQKKVADPSVHEVLAPVIYEQREVSDEDIINWMMIALCLETVRCLEDGIVETAAEA 654

Query: 647 DIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQTQYGDRFEPCQRLKAMAAEKARF 706
           D+G ++GIGFPPF GG   YID++G    V + ++Y    G  + P  +L+ MA     F
Sbjct: 655 DMGLVYGIGFPPFRGGALRYIDSIGVAEFVALADKY-ADLGPLYHPTAKLREMAKNGQSF 713

Query: 707 F 707
           F
Sbjct: 714 F 714