Pairwise Alignments

Query, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  390 bits (1002), Expect = e-112
 Identities = 223/544 (40%), Positives = 319/544 (58%), Gaps = 10/544 (1%)

Query: 863  KEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRSDFIGN---LLTFELYP 919
            +E  L+      ++  EG+ + D   R V VN A  RI+  +  + +G    L     + 
Sbjct: 75   QETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHD 134

Query: 920  ESFSNQIRTMLKQQGRWASEVEANRGDNSHFHMELTIDAIYDELGELSHYVGVFSDISRR 979
              F  Q+   LK +G W+ E+   R +   +     +  I+D  G+LSHYV VFSD+S  
Sbjct: 135  AEFYQQMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLSHYVAVFSDLSAL 194

Query: 980  KQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINH----ALMVLDLDNFKRINDSL 1035
            K+  EEL +L + D L  LPNR          + +   H    AL+++DLD+FK IN+SL
Sbjct: 195  KRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINESL 254

Query: 1036 GHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNT 1095
            GH +GD LL+ VS R+   + K   + RLGGDEFA++ +      A+A +A RI+D  N 
Sbjct: 255  GHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATA-LALRILDRLNE 313

Query: 1096 VYEIDNEQLVLGVSVGIVLYP--DDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNE 1153
             + I +++L    S+GIVLYP   D QN + L+R AD A++ AKS+G + Y FYSE L  
Sbjct: 314  SFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTS 373

Query: 1154 HAIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIP 1213
             A +++E    +R+ L++    ++YQP  DL+ G ++G EALVR  HP  GLI P  FIP
Sbjct: 374  QARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIP 433

Query: 1214 LAEENGLIVEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRL 1273
            +AEE GLI  I   VL +AC  A++W  QG   G +AVN+SSR F   +L  ++ +IL  
Sbjct: 434  IAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILAR 493

Query: 1274 TQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHT 1333
            + L A HLELEITE  V++ P+ A+ ++Q+L  +GV LA+DDFGTGYSSL  LKR  +H 
Sbjct: 494  SGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHK 553

Query: 1334 LKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGY 1393
            LKID+ FV  +     D  +  S+I +AHN+GL VV EG+E A Q   L A NC+  QGY
Sbjct: 554  LKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGY 613

Query: 1394 IFSK 1397
             F++
Sbjct: 614  GFAR 617