Pairwise Alignments

Query, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1491 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  427 bits (1098), Expect = e-123
 Identities = 387/1482 (26%), Positives = 671/1482 (45%), Gaps = 144/1482 (9%)

Query: 42   LFGVPQGLSQGTVTSIVQDNDGYLWIGTFNGLNRFDGSNFKYFFADGTNSGLPSSFIRSL 101
            +F    GLS G + +I  D+ G++W+ T +GL R   +  +        + L  S+I  +
Sbjct: 32   IFASRDGLSNGMINAIAFDSYGFVWVATEDGLFRISKTVARRVDTQQGENRLNDSYIMDV 91

Query: 102  QIDKNGILYVGTDNGLAVYDKNNDSFIKYGAPLDNTPIWSINTTIETLIVGTNNAIIDIH 161
                   L V   + L  Y   +D+F + G+     P +     I+  +V  ++ ++ ++
Sbjct: 92   VALGQEYLLVSVSDSLYRYHIPSDTFEEIGSE-SLFPEYEGGGIIDRTVVDQHSLML-LN 149

Query: 162  GKENHLDLSSKGIGEIKKSIKIGDDYFLKDYSGKLFKINQESSILIKENIIDIEQKNNKS 221
             K   L L      +++K I++  D  L     KL  +     I+ K + ++I     + 
Sbjct: 150  SKGQILKLDHHS-WQLEKVIQLQQDPDL--LWDKLLYLPSGQLIIGKSDHLEIRSAQGEK 206

Query: 222  LI-----------------------ISTKDGLFEY--DGVLINRIDNRSFSQLAKNNN-- 254
            L+                       ++  +GLFE   D   I  +    F   A N +  
Sbjct: 207  LVDLPWVEASGQAKRLFRDRAGRVWLTASEGLFEVLPDTQQILPVPQVPFYVTAINEDGK 266

Query: 255  ------TIYGISENYIIDINNKKTIGLISAF-NPDKTT-VFYANNNFFTLGSVDQGFFII 306
                  +  G  +   +D   +K    +  F N D    V   N     LG   +G  + 
Sbjct: 267  GNLWMASSSGALKWSPVDQTLEKFDSDLRQFANIDSVQDVAIDNQGLIWLGGAGEGLVLA 326

Query: 307  KKQNNLVKKT-------SLTTNSTWHLSKNSQGFLVSSEAEKITLFNNEFKKI----RDY 355
              + + ++ T       SL     W +      + + ++A  +++ +     +     ++
Sbjct: 327  ADKPSFLRGTFTDQPPYSLGNQMIWSIFTEGDRYWLGTDAGVVSVQDGVAGSVLSTPEEF 386

Query: 356  NTYTTGYKYALLHKNQLLYGTSNGLFLDN-SNSVKKLSNETISALSSNEDDSILSA---- 410
                T Y    L    LL  T+NGLFL + + ++ K  +E  S   S +   I       
Sbjct: 387  EPNDTVYAITSLSSEYLLLATTNGLFLQHKTTNLTKRFHEWSSGSDSLKRKWIYQVYKDP 446

Query: 411  GTPDGKILIIKNSEI--------------IKTFNTERKEP-IFDIETISENLFYIASQGG 455
            G P G++  + ++ +              I + + ER +P I+ +   ++   ++     
Sbjct: 447  GIP-GRLWFLTSTGLFYWEPGLFDPQEYAIVSRSGERHQPAIYSMLRGADGKLWLGGPDE 505

Query: 456  LRKYDNGQETLISEQLTYSIQKDR----------NYLLFGTSK-ALMRYDITNEKIDTLF 504
                D     +   +L    + D             L  GTS   ++ Y +  + + +L 
Sbjct: 506  FGYLDADGYFIDKRELFSGKRGDLLVGHILEIAPGKLWLGTSLFGVVEYQVNTDTLTSL- 564

Query: 505  SKNKEIYSIASDTNFITVSSLGEVIIFDKNSKTSYALGTSNGSQY---------EYNSPS 555
               ++ + ++  T +  + +    +I    S      GTS    +         E+N  +
Sbjct: 565  ---QDRWKLSCYTTYGLIDTPDYRVILCPRSLVREHKGTSEVQVFTVEDGVVNNEFNDGA 621

Query: 556  -AIKINDFILLAGINGVSLVSPQEISDYIKSQKANKTEISKFSVFNMSQEKNGKYLKKPI 614
             A + +  + L   NGV L+    + + I  ++     ++ F  ++   EK+      P 
Sbjct: 622  YAYREDKGLFLGSPNGVRLLDVNGLKNRITDERVFLESVTVF--YDSHTEKS----LVPS 675

Query: 615  DVT------KEITLKYSDYPFSFDFISPMSDESSTNYYYRMLG-----LSDTWIYSNGTN 663
            D+T      + I+L+ +    S DF+    D+S     YR LG     +   ++  +G  
Sbjct: 676  DLTMVEPGARMISLQLT----SNDFL----DDSPIRLKYR-LGKQGQLVEPKYLLLDGQP 726

Query: 664  SATYTNLSPGEYVFQVYTINNLSGEKSSEREVNVIITPPWWSSTQAKIFYFLITMFLSLF 723
                + L  G+   ++ ++ N     +      + +   WW +   K    +I M L+L 
Sbjct: 727  QLNLSGLDAGKLELEILSLRNQIWNDTPYIH-RLHVQQYWWETALFKWSLIVILMLLTLA 785

Query: 724  IFKAILRKREIQR------QIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGALEF 777
            I   ++R R+++R       +  SE+RL+ SL GS  ++W W  +    +  N  G L  
Sbjct: 786  II--LIRHRQVERFRHMNTALLESEDRLRQSLRGSDSDLWMWTRKDNAFYMDNRNGVLSV 843

Query: 778  PRDGHRSGNRDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWILDRAK 837
             +   +     EE  IHP D++RV         GE + FEA YR + +  +W W+  R +
Sbjct: 844  EQQVLKVNF--EEFPIHPDDRDRVVSHWLAVINGEIERFEAEYRFQRRTGTWGWLRVRGR 901

Query: 838  IVERDDKDNAL-RMTGTIKNISQFKQKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEA 896
              + + +   + +++G   +I+Q K  + ++ L  +A EN SEG+ ILD++ +    N A
Sbjct: 902  PSQLNKETGEVEKISGIYSDITQHKLLQNEVDLLAQAFENTSEGVLILDADEQIKVANRA 961

Query: 897  CCRISQRNRSDFIGNLLTFELYPESFSN--QIRTMLKQQGRWASEVEANRGDNSHFHMEL 954
               I     ++  G      L  E  +N  +I T+L     W  E E   G      + L
Sbjct: 962  AQSILGAGMAELAGRKF-IALLTEHGTNRSEIATLLANGMSWTGERELRIGSGQVCPVWL 1020

Query: 955  TIDAIYDELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNK 1014
             +  +    G++ HYV VFSDI+ RK+ E +LR+L N D+LTGLPNRS     L   ++K
Sbjct: 1021 NVSVMLGLQGKVQHYVVVFSDITERKRSEADLRRLANYDVLTGLPNRSLFAARLNQAIHK 1080

Query: 1015 EINH----ALMVLDLDNFKRINDSLGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFA 1070
               +    ALM LDLD FK +NDS GH +GD LL   + R++S +     + R GGDEF 
Sbjct: 1081 ATQNEEKLALMFLDLDRFKHVNDSFGHGMGDALLVEAAARLQSCIDPEYTLCRFGGDEF- 1139

Query: 1071 IVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKAD 1130
            +VL   +++     +A  I+    T +++   +  +  S+GI ++PDD +  +AL++ AD
Sbjct: 1140 VVLIHGAEVDTLNHLANTILGQIETPFKLFGREFYISTSIGISIWPDDARQPEALIKNAD 1199

Query: 1131 IAMYHAKSAGGNCYQFYSESLNEHAIKQLETENLIREGLKEDLFEVYYQPKVDLKHGH-V 1189
            +AMYHAK  G   +Q+YS+  N  A+  L  E  +R+ L+   F ++YQP+VD+   + V
Sbjct: 1200 LAMYHAKEEGRGNFQYYSQERNAEALYHLRLEADLRKALERQEFCLHYQPQVDVNDDNQV 1259

Query: 1190 AGMEALVRLNHPTLGLIPPNDFIPLAEENGLIVEIGEIVLRKACFAAQKWREQGLFKGRV 1249
             GMEAL+R  HP  G I  + FI +AE  GL+++I + VLR+AC    +W  +     ++
Sbjct: 1260 IGMEALLRWQHPKDGYIRTDIFIKVAEACGLVIDIDKWVLRQACLDGARWSRKLKRPFKI 1319

Query: 1250 AVNLSSRQFALPDLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGV 1309
            +VN+S+  F  PD    +   L  T +P  +L LEITEG ++K+  +A   ++ L +MGV
Sbjct: 1320 SVNISAVHFRQPDFIDHLRRTLEETCIPVENLALEITEGVLMKELHIARDHLRLLREMGV 1379

Query: 1310 SLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVV 1369
             +A+DDFGTGYSSL+YL+ F ++ LKID++F+ DI  +  D  +V SII +A N+ L VV
Sbjct: 1380 QVAIDDFGTGYSSLAYLRHFDVNLLKIDRSFLIDIADNQADQAIVSSIIELARNLKLKVV 1439

Query: 1370 GEGVEQAAQLNILRALNCEEIQGYIFSKAINEAEFTLLLQED 1411
             EGVE   QLN + +  C  IQGY F+K +   +    L  D
Sbjct: 1440 AEGVETREQLNQVLSRGCHVIQGYYFAKPMARDDMDAYLMLD 1481