Pairwise Alignments
Query, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3
Score = 560 bits (1442), Expect = e-163
Identities = 343/1006 (34%), Positives = 531/1006 (52%), Gaps = 63/1006 (6%)
Query: 446 NLFYIASQGGLRKYD-------------NGQETLISEQLTYSIQKDRNYLLFGTSKALMR 492
N +I S GL K D + T+I+ ++ + + F T + R
Sbjct: 519 NTLWIGSLNGLVKLDMQTGQGQAFYHDPENKNTIINNRIRDILVASNGDVWFATHGGISR 578
Query: 493 YDITNEKIDTLFSKNKEIYSIASDTNFITVSSLGEVIIFDKNSKTSYALGTSNGSQYEYN 552
E D +F + SDT + + I F N+ L SNG +N
Sbjct: 579 LSAQAE--DMVFRDYTREQGLPSDTIYALLEDDEHHIWFSSNAGIG-KLNPSNGKIINFN 635
Query: 553 SPSAIKINDF------------ILLAGINGVSLVSPQEISDYIKSQK----ANKTEISKF 596
++ +F + GING++ +P+ I D K A K +
Sbjct: 636 EQEGLQALEFNGGVKLKDSDGDLWFGGINGINRFNPKAIPDQRSEAKVALTAYKIAGKRH 695
Query: 597 SVFNMSQEKNGKYLKKPIDVTKEITLKYSDYPFSFDFIS-PMSDESSTNYYYRMLGLSDT 655
++ ++S +I + Y D SF+ S S + Y + G +
Sbjct: 696 TILDLSHPP-------------KILMNYDDQLVSFEVTSLDFSYTGKNRFSYYLEGFDNQ 742
Query: 656 WIYSNGTNSATYTNLSPGEYVFQVYTINNLSGEKSSEREVNVIITPPWWSSTQAKIFYFL 715
W N T+TN++PG YV V + E S V++ + P++ S A Y L
Sbjct: 743 WHDLPSGNEITFTNINPGHYVLHVRHSLEYNSEGSYALLVDLTVKAPFYRSQIAYALYVL 802
Query: 716 ITMFLSLFIFKAILRKREIQRQ----IALSEERLKLSLWGSGDEMWDWDIETGNIFRSNI 771
+ + L +I +KRE Q++ I SEERLKL+LW SGD MWDW+I+ ++R++
Sbjct: 803 LALGLMGWIVLWRKQKREQQQEFETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTHT 862
Query: 772 WGALEFPRDGHRSGNRDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIW 831
+ P S + N HP D+ER ++ L H G T FE YR++ +W+W
Sbjct: 863 ----DIPVS-QWSSHTLLHDNAHPEDRERFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLW 917
Query: 832 ILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLRLFEKAIENISEGMFILDSEYRFV 891
IL+R K+VE ++++ +RMTGT +NI+ K E +L L + + +++E + + +YR
Sbjct: 918 ILERGKVVETNNQEQPMRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIR 977
Query: 892 EVNEACCRI---SQRNRSDFIGNLLTFELYPESFSNQIRTMLKQQGRWASEVEANRGDNS 948
VN A I S+R SD L + N I L + WA E+
Sbjct: 978 SVNPAFSAITGYSERQISDKYLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNRARK 1037
Query: 949 HFHMELTIDAIYDELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTL 1008
+ L I+ + D GE SH+V VF+DI+ RK+ EE+LR L + D LTGLPNR+ Q L
Sbjct: 1038 AILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRL 1097
Query: 1009 GNLVNKEINH----ALMVLDLDNFKRINDSLGHQVGDKLLKLVSVRIKSSVPKNTNIYRL 1064
+ +++ AL+ LDLD FK INDS+GH +GD LLK V+ R++++V + + RL
Sbjct: 1098 NHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARL 1157
Query: 1065 GGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQLVLGVSVGIVLYPDDEQNEQA 1124
GGDEF I+L+ + A+ I+ +++ AF + +D++ L + S+GI LYP+D ++ +
Sbjct: 1158 GGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLTISTSIGISLYPNDAEDVDS 1217
Query: 1125 LLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLETENLIREGLKEDLFEVYYQPKVDL 1184
L++ AD AMYHAK+ G N +QFY+ LNE A + ++ E +++ + + + YQPK L
Sbjct: 1218 LIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHVQLEAGLKQAISRNELSLVYQPKFCL 1277
Query: 1185 KHGHVAGMEALVRLNHPTLGLIPPNDFIPLAEENGLIVEIGEIVLRKACFAAQKWREQGL 1244
+ G + G+EAL+R +H LG I P +FIPLAEE G+I +IG V+ AC +W E G
Sbjct: 1278 RKGSLTGLEALLRWHHSELGPISPAEFIPLAEETGIINQIGHWVINHACQQLAEWNELGF 1337
Query: 1245 FKGRVAVNLSSRQFALPDLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQL 1304
+AVNLS+RQ D+ IE L ++ LPA LELE+TE ++ P+ ++ ++ +L
Sbjct: 1338 GDISMAVNLSARQLK-ADIISTIEVALSVSGLPAKALELELTESMIMGNPQESVNILSKL 1396
Query: 1305 AKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNM 1364
+G+++A+DDFGTGYSSLSYLKRFPI TLKID+ FV DI D + +II +AH++
Sbjct: 1397 KALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSL 1456
Query: 1365 GLSVVGEGVEQAAQLNILRALNCEEIQGYIFSKAINEAEFTLLLQE 1410
L+VV EGVE QLN L C+++QG++ SK ++ + LLQ+
Sbjct: 1457 ELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCLALLQQ 1502
Score = 71.6 bits (174), Expect = 5e-16
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 47 QGLSQGTVTSIVQDNDGYLWIGTFNGLNRFDGSNFKYFFADGTN-SGLPSSFIRSLQIDK 105
+GL+Q T+TS+ D+ G LWIGT +GL+ ++G NF F N S + SFI + D
Sbjct: 51 EGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNNPSSISESFISDIIQDA 110
Query: 106 NGILYVGT-DNGLAVYDKNNDSFIKYGAP--LDNTPIWSINTTIETLIVGTNNAIIDIHG 162
G L++GT G+ D N +F ++G L + + +N TL +GT + +
Sbjct: 111 EGYLWIGTFSQGVNRLDLNTGTFERFGLEQGLTDPRVTKLNIVGNTLWIGTQGGLFSLSI 170
Query: 163 KENHLDLSSKG 173
K + S G
Sbjct: 171 KTQRITQVSLG 181
Score = 51.6 bits (122), Expect = 6e-10
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 39 NSNLF----GVPQGLSQGTVTSIVQDNDGYLWIGTFN-GLNRFDGSNFKYFFADGTNSGL 93
N NLF P +S+ ++ I+QD +GYLWIGTF+ G+NR D N F G GL
Sbjct: 84 NFNLFIHSPNNPSSISESFISDIIQDAEGYLWIGTFSQGVNRLD-LNTGTFERFGLEQGL 142
Query: 94 PSSFIRSLQIDKNGILYVGTDNGL 117
+ L I N L++GT GL
Sbjct: 143 TDPRVTKLNIVGN-TLWIGTQGGL 165
Score = 41.2 bits (95), Expect = 8e-07
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 26/211 (12%)
Query: 56 SIVQDNDGYLWIGTFNGLNRFDGSNFKYFFADGTNSGLPSS---FIRSLQIDKNGILYVG 112
+I QD G LW + GL R S ++ T S P+S +IRSL++D G L+V
Sbjct: 420 AITQDRQGVLWFASNYGLGRLTPSG-EFTLLKLTQSQDPASEANYIRSLELDAQGQLWVA 478
Query: 113 TDNGLAVYDKNNDSFIKYGAPLDNTPIWSINTTIETLIVGTNNAIIDIHGKENHLDLSSK 172
T + L Y L+ S+ T T N ++ + N L + S
Sbjct: 479 TSHAL------------YRKALEKDEFTSVPLTDIENFHPTQNLLLILRADGNTLWIGSL 526
Query: 173 GIGEIKKSIKIGDDYFLKDYSGKLFKINQES-SILIKENIIDIEQKNNKSLIISTKDGLF 231
G +K ++ G G+ F + E+ + +I I DI +N + +T G+
Sbjct: 527 N-GLVKLDMQTG--------QGQAFYHDPENKNTIINNRIRDILVASNGDVWFATHGGIS 577
Query: 232 EYDGVLINRIDNRSFSQLAKNNNTIYGISEN 262
+ + + ++TIY + E+
Sbjct: 578 RLSAQAEDMVFRDYTREQGLPSDTIYALLED 608
Score = 37.0 bits (84), Expect = 1e-05
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 46 PQGLSQGTVTSIVQDNDGYLWI-GTFNGLNRFDGSN--FKYFFADGTNSGLPSSFIRSLQ 102
P +S + ++QD G LW+ G+++GLN+ + F++ F T S+ IR++
Sbjct: 311 PNSISDNNILCLLQDTFGNLWLGGSYSGLNKINTRRQYFQHLFEYTTELPQQSNNIRTIF 370
Query: 103 IDKNGILYVGTD 114
++ L++GT+
Sbjct: 371 RSQDKALWIGTE 382
Score = 32.7 bits (73), Expect = 3e-04
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 54 VTSIVQDNDGYLWIGTFNGLNRFDGSNFKYFFADGT-NSGLPSSFIRSLQIDKNGILYVG 112
+ I+ ++G +W T G++R F D T GLPS I +L D ++
Sbjct: 557 IRDILVASNGDVWFATHGGISRLSAQAEDMVFRDYTREQGLPSDTIYALLEDDEHHIWFS 616
Query: 113 TDNGLAVYDKNNDSFIKY 130
++ G+ + +N I +
Sbjct: 617 SNAGIGKLNPSNGKIINF 634
Score = 31.6 bits (70), Expect = 6e-04
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 47 QGLSQGTVTSIVQDNDGYLWIGTFNGLNRFDGSNFKYFFADGTNSGLPSSFIRSLQI-DK 105
QGL T+ ++++D++ ++W + G+ + + SN K + F +++ D
Sbjct: 595 QGLPSDTIYALLEDDEHHIWFSSNAGIGKLNPSNGKIINFNEQEGLQALEFNGGVKLKDS 654
Query: 106 NGILYVGTDNGL 117
+G L+ G NG+
Sbjct: 655 DGDLWFGGINGI 666
Score = 31.2 bits (69), Expect = 8e-04
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 58 VQDNDGYLWIGTFNGLNRFD 77
++D+DG LW G NG+NRF+
Sbjct: 651 LKDSDGDLWFGGINGINRFN 670
Score = 29.6 bits (65), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 89 TNSGLPSSFIRSLQIDKNGILYVGTDNGLAVYDKNN 124
+ GL + I SL +D G+L++GT +GL Y+ N
Sbjct: 49 SEEGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYN 84