Pairwise Alignments

Query, 399 a.a., prophage LambdaSo, site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 400 a.a., tyrosine-type recombinase/integrase from Pantoea sp. MT58

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 19/292 (6%)

Query: 102 WYLTRSQADTSLSIKRRRNIKCTIVKHLLPVLGEVMLSELNHHKVDELLIWPLQARYSIG 161
           W+  +S++ T    K   +I  ++ K + P +GE+ +  L    + E L  P++AR ++ 
Sbjct: 114 WFQLKSKSVTEDYAK---DIWRSLEKDIFPSIGEIPVQALKARTIVEALE-PIKARGALE 169

Query: 162 SVRQYYAVLRKAFKQATVLKLISDDPLASLSFTDFIATPIATKPPQLQATDLPKLLSDL- 220
           +VR+    + +    A    LI  +P + +        P     P L+  +LPKL+  L 
Sbjct: 170 TVRRLVQRINEIMIYAVNTGLIDANPASGVGMA--FEKPKKQNMPTLRPEELPKLMRSLV 227

Query: 221 -DTASDSAALLVFIMLAYGTRIGETRLLKWSYYDEPNAKLVIPANITKTQAQLTIPISGL 279
               S +   L+   L    R  E     W+  D       IPA   K + +  IP+S  
Sbjct: 228 MSNLSVTTRCLIEWQLLTLVRPSEASGALWAEIDRDAKIWTIPAKRMKAKREHIIPLSPQ 287

Query: 280 MADILRWHKSMQAAAGYRGGYLFPHPCRNT---GLDERGANSLVKQVS-GGEWTAHDLRK 335
             +IL     M+  + +R  ++FP   RN     ++ + AN+ +K++  GG+  AH LR 
Sbjct: 288 ALEIL---DVMEPISAHRE-HIFPS--RNDPKRAMNSQTANAALKRIGFGGKLVAHGLRS 341

Query: 336 LARSCWADLGIDYMVAEQMLNHS-MTKLDQAYIHTYLADQKREAIELWHKHL 386
           +A +   + G++  V E  L H+   ++ +AY  +   DQ+ + +  W K +
Sbjct: 342 IASTAMNEAGLNPDVIESALAHTDKNEVRRAYNRSIYLDQRIDLMNWWGKQV 393