Pairwise Alignments

Query, 170 a.a., hypothetical phage terminase, small subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 156 a.a., Probable PhiRv1 phage protein from Mycobacterium tuberculosis H37Rv

 Score = 53.9 bits (128), Expect = 1e-12
 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 5   RKTTPTALKLVTG-NPGKRPLNKK---EPKLEAGIPRMPAYLSPRAKAAWKKLTKLLKDM 60
           R   P  LKLV G +PG+    +K    PK     P  P +L   A A W+++   L+ +
Sbjct: 3   RPPKPARLKLVEGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERL 62

Query: 61  GVLTLADGMALERLCDVYSEILDLRDEIKQNGRTYQSIKIIGENIDEETKEFTQVEQMLM 120
            +L   D   L   C+ +S  +     ++  G T  S K                   ++
Sbjct: 63  DLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPK-----------------SGVV 105

Query: 121 KANPAVQMLADADRRFKAYLVEFGLTPSARSKVQVTDGD 159
             NPAV +   A         EFGLTP+A  ++ V  GD
Sbjct: 106 HRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGD 144