Pairwise Alignments

Query, 914 a.a., prophage LambdaSo, tail length tape meausure protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1707 a.a., prophage tail length tape measure from Burkholderia phytofirmans PsJN

 Score =  174 bits (440), Expect = 6e-47
 Identities = 226/915 (24%), Positives = 381/915 (41%), Gaps = 124/915 (13%)

Query: 30   ALAKTEAAAAKQKAELNRLLGQIDPLVAEYSKLDKMEQQLRRHRESGSLQQAEYDTYSKK 89
            A+ K E A +K  A L     + DPL A   +L+  +  L    +SG++  A+Y+     
Sbjct: 190  AIGKDEDARSKSLAALT---AKYDPLGAATRRLEADQALLEDAFKSGAVSAADYERALNG 246

Query: 90   IAQMRTEVGKAGVEYDKTGMSA--KQMAFATRGLPAQFTDIAVSLQAGQNPMTVFLQQGG 147
            I   +  +G   +   +  + A  +  A A+        DIA S QA  +  T   Q  G
Sbjct: 247  IKADQASIGLRQLAQQEAQLEASFRSGALASADFRRAMADIATSRQALTSVATG-AQAAG 305

Query: 148  QLKDMFGGVGPAAKA----------------MGGYIMGL---INPFTVAASAAGVMALAY 188
               + FG     A+                  GG +M L   ++   VA S AG+   A 
Sbjct: 306  AAVEGFGLKTAGARREVIVLAHEAATGSWSNFGGSLMVLAERMDLMEVATSGAGLAVAAI 365

Query: 189  -----------YQGSIEADRLRNALILTGNSAGTTTDQLMEAAKRIDAISGTQRQASAAL 237
                       Y+ S +   +  AL+LTG+ AG TT++L   A+   A   T   A+ A+
Sbjct: 366  AAPILLAGAAMYKVSEQNAAMNEALVLTGDYAGVTTEELRGMAQAATAGGATFDTAAEAV 425

Query: 238  AEVANTGKFTASQIELVGLAAVKMENTTGKAVADTVAEFVKLADDPVKAAEELNKKFNFL 297
              +A TG+ T  +I  +G         T  +V   V +F +LA+DPVKA+  LN ++++L
Sbjct: 426  TALAATGRLTGQEIADLGRTTADAATYTSISVKQMVDDFTRLAEDPVKASVALNDQYHYL 485

Query: 298  SASTYEQIVALKEAGKSTAAAELAFSAYSNAIDQRTKEITGNLGSIEKAWKAIKS---GA 354
            +ASTY+QI AL++ G +T AA++A  A+S A+D+RT EI  N G I   W+ IKS   GA
Sbjct: 486  TASTYDQIAALEKQGDATGAAQIAVEAFSKAMDERTGEIARNEGIILAGWRDIKSMINGA 545

Query: 355  VESWDQILNIGRADTLEQQYAALSKRIEDLRPKTKQGEWGYGLAREELKALEAERDSVMA 414
            +E+      +G           +++ + + + +   G W      +  KA+ A RD   A
Sbjct: 546  IEA------VGSFGATAGPAEVVARMLANKQARNPLGTWDADDEADLQKAI-AARD---A 595

Query: 415  LMKTERDRSAEQAKRAKLNQDSIEAQRAIAKVTEETLTNEQKRNKAIKEYNDNIEKVRKA 474
             +KT RD++++  ++ +L    I+A+R  A   E+  T  +KR KA+ EY D    +   
Sbjct: 596  AVKTARDKASQSEQQQQL----IDAKRWYATWNEQFATPAEKRVKAVNEYLDKTAAL-NL 650

Query: 475  DPNSALLNADKIKRDLASIEEKFKDSAKTTKAFADDA-ATSYLMRLRETQAGLQGQLDRN 533
             P   L +  KI     + ++K K   K      D A  T  +  +++  A     +D  
Sbjct: 651  SPEQQLADEQKI-----NDKDKDKTGRKGGTGLVDRAELTGEVQAVKDALAQELSAVDGA 705

Query: 534  TKLTQSQKE----------------LLQFEQQIADIKNKDV-----------LTAQQKSL 566
             K+  SQ +                L Q      D   K+            L+A Q++ 
Sbjct: 706  RKVLDSQYKGGALSITDYYTLDRNLLAQAATDHIDAATKEAALIVQGMNNRNLSAVQRAQ 765

Query: 567  LAE-----------------QSVIRAQLEKNVALDEELKKRNEALRLQSYSANLAANLAA 609
            LA                  Q V ++  +++   D+  K + +A++ Q  SAN       
Sbjct: 766  LANQERKALADGGKAVEDFFQKVAQSAAQEDEVWDKYGKSQLDAMQKQIDSAN------Q 819

Query: 610  EQQRNADKLASFGLGDKAQQRLGDRQSIERDIERAQGKALSDNLAGRTTDEEYQAQLVML 669
            +QQ   D++ +FG+   A   L   ++ +      QG+A++  L G   D +   + +  
Sbjct: 820  QQQSLRDQIDTFGMTKAAIDDLKASRADDTVAALEQGRAIA-LLQGNLADTKSWDEAIAK 878

Query: 670  KQNLSDRLAAQNEYYIALD--AKQADWTNGARSSMQNYIDAAAD--MAGQTEKLFD--SA 723
             ++LS+ L         LD  A+     +    S Q+ ID        G  + L D  + 
Sbjct: 879  AKSLSNALHGVASDQATLDDLAQAKKQQDDLVKSWQSTIDGIGTDFHNGFLQMLTDGKNG 938

Query: 724  FGGMTDALTDFVTTGKADFAWLTKS---ILADIAKIAMQKAIAGIASSIFGGFSEGGAVG 780
            +   T +L +   T   D  + + +   +++ IA+IA     +G+ +SI      GG  G
Sbjct: 939  WSSFTKSLKNTFETTVVDELYKSFAKPFVVSVIAQIAGIAGGSGVQNSILQNNGMGGGNG 998

Query: 781  YSSGGYTGAGGKYEPAGIVHRGEVVWSQ--RDVARAGGVATVEAMRKGHKGYDNGGIVGG 838
              +   +   G Y      +   + W Q     + A G + +     G      GG++ G
Sbjct: 999  TLNNLLSNPYGTYNNLSNGYNTVMGWIQGYGGASTALGASAIAGASTG--ALSGGGVLLG 1056

Query: 839  AAYNGVPASATAGAG 853
                G+     A AG
Sbjct: 1057 GLGGGIGGDVAASAG 1071



 Score = 31.6 bits (70), Expect = 4e-04
 Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 249  SQIELVGLAA-VKMENTTGKAVADTVAEFVKLADDPVKAAEELNKKFNFLSASTYEQIVA 307
            +Q  ++ LA  V   NT+            + A+D  K+  +      +    T +Q   
Sbjct: 1357 AQTAVLSLAGGVDSFNTSATYFYQHFTSAAQQANDASKSVTDQLAALGYSGIHTRDQFRN 1416

Query: 308  LKEA-GKSTAAAELAF-------SAYSNAIDQRTKEITGNLGSIEKAWKAIKSGAVESWD 359
            L E+   STAA + A+        A+ N +      +     +  +A ++ +   V+ + 
Sbjct: 1417 LVESLDLSTAAGQQAYVSLLALAPAFDNVVSSYESAVASAYSTQSQALQSFRD-QVDQFR 1475

Query: 360  QILNIGRADTL--EQQYAALSKRIEDLRPKTKQGEWGYGLAREELKALEAERDSVMALMK 417
            Q L  G   T   EQQYA   +R EDL  K   G+     A  +     A +D + A   
Sbjct: 1476 QSLTTGDLSTASPEQQYAETRQRFEDLYGKAIGGD-----ATAQAGLTSAAQDFLNASKA 1530

Query: 418  TERDRSAEQAKRAKLNQDSIEAQRAIAKVTEETLTNEQKRNKAIKEYNDNIEKVRKA 474
                    Q+  A++ Q    A  +     +  L   ++  K I + N +++ V +A
Sbjct: 1531 YNASSGQYQSDLAEVMQSMDYASSS----ADAQLDQLKEMVKGIVDVNTSVQTVAEA 1583