Pairwise Alignments

Query, 407 a.a., sodium/glutamate symporter (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 402 a.a., sodium/glutamate symport carrier protein GltS from Phaeobacter inhibens DSM 17395

 Score =  235 bits (599), Expect = 2e-66
 Identities = 141/418 (33%), Positives = 222/418 (53%), Gaps = 29/418 (6%)

Query: 1   MHTTYTIGELESFLIAIFVLFIGHSINRHVRVFKQYNIPEPIVGGLVVAAVIAFLH-FQD 59
           M     I +  S  +   V  +G  +N  V V +++NIPEP+ GGL+ A V+  ++    
Sbjct: 1   MDAQINIPDFISLTLGFAVYLLGARLNERVPVLRRFNIPEPVSGGLLAAVVVMIIYSVGG 60

Query: 60  ITLAFSLPMQNTLMLMFFSTIGLSANYKLLLSGGKKVFIFLGVASVYIIIQNAVGVSLAS 119
             + F +  ++ L+++FF+ IGL+A    L++GG+ + + L +  + I+ QN +G + A 
Sbjct: 61  WAITFEMATRDYLLVLFFAGIGLNARLADLVAGGRPLVLLLILTFLAILAQNVIGAAGAL 120

Query: 120 LLGLDPILGLIAGSITLSGGHGTGVAWSQTFAENYGIN-TLEFAMAAATFGLVMGGIIGG 178
           L G    + ++ GS  L GGHGT +AW+   A   G+    E  +A AT GLV+  ++GG
Sbjct: 121 LFGYPLQVSVLFGSAALIGGHGTAIAWAPDVAAQTGLTGAAELGVAVATLGLVLAALVGG 180

Query: 179 PVAQRLISKHNLVSSYG-----VGRKHHATHPQLVTYDQLEEDQVTAKTIIETLFVLLFC 233
           PVA+ LI++H L  +       VG  H A     + +  L    +     I   +   F 
Sbjct: 181 PVARFLINRHGLTPARPDEEPTVGLAHDAEDVPAIDHLSLMRVMLHLNVAIIIGYFSSFA 240

Query: 234 VAGAKWFTVLVSEYGLNWLKMPDFVYALFLGVVIANITEVTRGYKPH------TESIDVI 287
           +  A              LK+P FV  L  G+V+AN+     G  P+      T ++ +I
Sbjct: 241 LDAAG-------------LKLPLFVPCLIAGIVLANLR---MGVMPNAAPVARTPALALI 284

Query: 288 GTVALSLFLSMALMNLKLWEILDLAIPLLIILVVQTAVLAVFAYFVTFKVMGSNYDAAVI 347
              +L  FL+M+LM+L+LW +  L + + +I++ QT     F  FV F  +G  Y AAV+
Sbjct: 285 SEFSLGAFLAMSLMSLQLWTLSSLGLAIAVIMLAQTVFTVAFVLFVLFPFLGRGYRAAVL 344

Query: 348 TGGHCGFGMGATPTAVMNMGALVSRTGPSPQAFMVVPIVGAFFIDIVNLIVLQGYLSF 405
             G  GF +GATPTA+ NM A+  R GPSP AF+V+P+V AFF+DI N IV+Q  ++F
Sbjct: 345 AAGFGGFALGATPTAIANMTAVTKRYGPSPIAFVVLPLVSAFFVDIANAIVIQAIVNF 402