Pairwise Alignments

Query, 296 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 320 a.a., NAD-dependent dehydratase from Herbaspirillum seropedicae SmR1

 Score = 53.9 bits (128), Expect = 5e-12
 Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 23/274 (8%)

Query: 1   MKILITGASGFIGQQLVAHLANQHELLLLTRHPGSIRQLLGP---QHQYLSSLDEIDD-- 55
           M IL+TGASGF+G+ L++ L ++ + LL      S   ++     +   +S LD   D  
Sbjct: 1   MHILVTGASGFVGRALLSRLDSEGQHLLRGAFRPSSETVMDRERIERTVISGLDPETDWS 60

Query: 56  --LNHINAVINLAGEPIVAKRWSAQQKQHICDSRWNITARLSQLILQSNNPPQVMISGSA 113
             L++I AV++ A    V    +          R N+   L+          Q  I  S+
Sbjct: 61  AALHNIEAVVHCAARVHVMNETAGDPLAEF--RRINLEGSLALARQAQQAGVQRFIFLSS 118

Query: 114 IGFYGRQGAI--PIDEHAVPHSEFSHDICK---EWERLALKATSKTRVCILRTGIVLGHG 168
           I   G Q ++  P      P     + I K   E   L L  T K +V I+R  +V G G
Sbjct: 119 IKVNGEQTSLGRPFTADDKPAPTDPYGISKMEAEQALLELGRTGKMQVVIIRPVLVYGPG 178

Query: 169 --GALAKMLPPFKLGIGGPIG---HGRQGMSWIHMHDMVALIEFLLCHQECHG-IFNATA 222
                  M+     G+  P+G   H R+  S + + ++V LI   L H    G +F A+ 
Sbjct: 179 VKANFLSMMRWLDKGMPLPLGGITHNRR--SLVALDNLVDLITVCLAHPAAAGQVFLASD 236

Query: 223 PYPVSNTEFSKTLGKVLNR-PAFMTTPVPVLRLA 255
              +S T   + LG+ L++ P  +  P   L LA
Sbjct: 237 GEDLSTTGMLQRLGRALDKSPTLLPVPASWLTLA 270