Pairwise Alignments

Query, 303 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 397 a.a., class I SAM-dependent rRNA methyltransferase from Ralstonia sp. UNC404CL21Col

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 76/213 (35%), Positives = 104/213 (48%), Gaps = 16/213 (7%)

Query: 16  DAVRLFHGRGGHYAGCEHLCLDWFAPVLLLTSFIQLEEAELADCQQAITARWQALQPNRP 75
           DAVRL  G      G   L +D +          Q   A +   +QAI A   AL     
Sbjct: 97  DAVRLVMGEADGLPG---LIVDQYGTGDAGQLVCQFSAAGVEHWKQAIVA---ALIKETG 150

Query: 76  LNLVYQY-------RCGGETFSQLLTG-EVPEQHIVTENRAKFQVHLLRGQNHGLFLDMA 127
              VY+        R G E  + +L G E P     TE+  ++ V +  G   G ++D  
Sbjct: 151 CPNVYERSDVSVREREGLEQMTGVLAGAEPPADLSATEHGVRYYVDVREGHKTGFYVDQR 210

Query: 128 NGREWVRANARHKKILNLFAYTCGFSVAALQGGADEVVNMDMSKGALAIGKQNHLLNDF- 186
           + R  V A AR + +LN F YT GFS+AAL+GGA  VV++D S  ALA+ ++N  LN F 
Sbjct: 211 DNRALVGALARDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVTLNGFD 270

Query: 187 TAGARFLGHDIFKSWGKLRKLG-PYDIVVADPP 218
            A A +L  D+FKS    R  G  +D++V DPP
Sbjct: 271 PARAEWLDADVFKSLRNFRAEGRQFDLIVLDPP 303