Pairwise Alignments

Query, 884 a.a., TonB-dependent receptor domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 996 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  196 bits (497), Expect = 8e-54
 Identities = 244/982 (24%), Positives = 396/982 (40%), Gaps = 157/982 (15%)

Query: 35  DNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKTGLSDVSAVLAQMP-------FNT 87
           D   ++++ VTGSRI RT   +  PVT ++AE+I  TG + +S ++A+MP          
Sbjct: 40  DTTDLDKVTVTGSRIARTGFVTPSPVTAITAEEIRATGATTISDLMARMPALAPSYTLGN 99

Query: 88  AGSFISDAGSSASNHASSGMRGLGSNRTLTLINGRRIAPSATFGGDATNLNLIPMDAIER 147
           +  FI  AG    +     +RG+G +RTL L+NGRR   S+  G  A ++N IP++ +ER
Sbjct: 100 STRFIGTAGLGLLD-----LRGMGVDRTLVLVNGRRHVGSSP-GSTAVDVNTIPVEWVER 153

Query: 148 IEILRDGASAIYGSDAIGGVINIILKKTFDGLAFDAKFGNPTQGGRDEKSASVTFGN--T 205
           +E++  GASA+YG+DA+ GV+N ILKK+F G    A+ G   +G  +   AS + G    
Sbjct: 154 VEVITGGASAVYGADAVAGVVNFILKKSFTGFETRAQTGLADEGNYNRSFASFSAGTDFA 213

Query: 206 SDKSSSLVIIEHKQFDPLEGGQRP--------------HLTANWDEKYGRSALYAPEGT- 250
             + +  V  E+ + D    G R                 T    E+  ++ L  P G  
Sbjct: 214 GGRGNIAVSGEYSKQDRFGRGNRAIGREYLVTVPNPAYDPTRPPSERNPQNVLSGPGGNH 273

Query: 251 --------------YRPVAS---RPIKGADGTFSDPVYTGLQVPGKDCP----ADRIVTS 289
                         +R  AS   R +   DGTF    Y G  V    C     AD  + +
Sbjct: 274 STSYGGTFNLGTFDFRNPASYGNRYLFNEDGTFRRNRYDGTVVSNTSCVDCDFAD--LNA 331

Query: 290 KAGSACGFNHFDGTDYLPDQTKDS--VFSNMTYRITDELEWFGQAIVMRDKSITSSTALW 347
            A    GF+       +  +  ++  +F    Y  TD  E+FGQ        +       
Sbjct: 332 VADLQPGFDRKSVNTMVNFELSENHRLFFEGKYSETDS-EFFGQPAFDSSLRVRRQNPYV 390

Query: 348 TPNLYIAAD---------NPLNPTFGTANAS-EVQAYHRLKGVA---------DRTTEFD 388
           +P L    D         N  N   G    + E + Y  + G           D +  + 
Sbjct: 391 SPELGALMDSRGATQILMNRFNVDAGRRGENIERKTYRAVLGAEGNFTDNWTYDVSANYG 450

Query: 389 SNVVD-----------VVTGLNLELDA-GSLSWYVQYSDQIVNIETDSYVFEDKLQEAVD 436
              VD              G++   DA G++          +N  T      +++  A+ 
Sbjct: 451 KTTVDRQNLNNRINERWQAGIDAARDASGNIVCRTTLDPNAINPNT------NRVYSALA 504

Query: 437 KGLYNPFVEGGN--ATQATLDTFLHTATRKATSNTTGTGLSWAALAPISLPGGDLGYAVG 494
           +    PF   GN   +      F  TA  +A    T    S A    +SLP GD+G A G
Sbjct: 505 REGCVPFSVFGNGAVSPEAAAWFNTTARSQAKIQQTVFSASVANSNLLSLPAGDIGIAGG 564

Query: 495 MEYQKIEYKDTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVL------DHLNVKL 548
           +EY+K + ++  D   A+G        +S G+ + +  FVE  +P+L      D L + L
Sbjct: 565 VEYRKEQSEEITDPLAASGVTFLNAIPNSGGEYTVREVFVESTIPLLAGLPGVDRLALDL 624

Query: 549 ASRYDQYSLPDVGQLSN-SVNVRYEALDNLVLRASYGQGFRAPSLDDLLGEPATSYDYVT 607
           A RY  YS   +G     ++ + +  + +L LR +  Q  RAPS+ +L    + ++  + 
Sbjct: 625 AGRYSDYS--SIGSTKTWNIGLDWTIIPSLRLRGTLAQAVRAPSIGELYDSQSENFATIN 682

Query: 608 DTTLCQSLPADQQKGNPACE------------------DTQYLRK---SSGNKELEPEKS 646
           D   C  L ++  +   A +                  DT    +   S GN EL+PE++
Sbjct: 683 DP--CNYLSSNSNRPGTAGDVALRQANCSALGVPVGWIDTYTANRPGVSGGNPELKPERA 740

Query: 647 AQYSFGAVW--NITENIDFVVDYYNIEITDQVSYIDAQTIVDLEAIGGLGAYDPNYIYVK 704
              S+G VW     E     VDY+ I++ D +  + A+T      +   G  + ++    
Sbjct: 741 RSLSYGLVWQPEFFEGFGMSVDYWRIDLQDAIGSVTAETNA-TRCVDNPGGINNSFCGFV 799

Query: 705 RKA--DGTIDEIG------------AGNINMDGVQTSGLDVSFTSNFDLADLGTFKFAVE 750
           ++A   G  D  G            A N N+   +  G+D+     F L + G     + 
Sbjct: 800 QRAPLGGFTDPQGRIYPEHSIIGWQALNENLARSRRVGVDLEMDYRFQLGE-GNTVLRLV 858

Query: 751 GTYALEYTEQA-SPIAKRYDVLGTKGYPP---LRFNTTFSYAIDDFSTSLIAKYIDSYDG 806
           GT  ++  E       + YD   T    P    +F T +++  +++  S    Y+D    
Sbjct: 859 GTRLIQSREWVFQDFPEEYDEYVTYVTDPRWRAQFQTKYNW--NEWRASWDMNYVDGNLR 916

Query: 807 ETPQQQEVGTNKQD---FSSFTTWDLTFNYDF-NSYGNVTVGARNLFDAMPAVNYSLGYP 862
            TP+               S+T  +  F Y F  S  +V +G  N FD  P  NY     
Sbjct: 917 VTPESYNSNPGSASPIKNGSYTYHNFQFGYQFPGSKIDVYLGIDNAFDKDPPRNYF--GS 974

Query: 863 GYDTDTHNILGRVVFAGYKVKF 884
            + +  ++ +GR  + G  VKF
Sbjct: 975 DFTSALYDNVGRFFYLGTTVKF 996