Pairwise Alignments

Query, 884 a.a., TonB-dependent receptor domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 909 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

 Score =  361 bits (926), Expect = e-103
 Identities = 284/926 (30%), Positives = 432/926 (46%), Gaps = 89/926 (9%)

Query: 17  GGATTAALSTMSVFAAEDDNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKTGLSDV 76
           GG    A+ T   FAA++ +  VERIEVTGSRI+R DME A P+T ++A+++AK+G S V
Sbjct: 15  GGLAAIAVPT---FAADNSDETVERIEVTGSRIKRIDMEGASPITTITADELAKSGFSTV 71

Query: 77  SAVLAQMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLINGRRIAPSATFGGDATN 136
              L     N  GS+   + +   + A+  ++G  +  TLTL++G+R+A S    G A N
Sbjct: 72  GDALRSSNLNAFGSWGGGSNNGWGSQATVQLKGASAFHTLTLLDGKRMAKSPVMDGGAAN 131

Query: 137 LNLIPMDAIERIEILRDGASAIYGSDAIGGVINIILKKTFDGLAFDAKFGNPTQGGRDEK 196
           +N IPM A+ERIEIL DGASAIYG+DAI GV+NIILKK F+G+ FDA+   PTQ G D  
Sbjct: 132 INTIPMAAVERIEILTDGASAIYGTDAIAGVVNIILKKDFEGIQFDARMDRPTQEGGDSS 191

Query: 197 SASVTFGNTSDKSSSLVIIEHKQFDPL-------------EGGQRPHLTANWDE--KYGR 241
           + S T G  S+K   +  +EH +   +             EGG  P    +W      GR
Sbjct: 192 NMSFTGGLDSEKGHLVFTVEHYESQKIMQKDRWYTRPFVKEGGN-PEDYQDWVNISPTGR 250

Query: 242 SALYAPEGTYRPVASRPIKGADGTFSD---PVYTGLQVPGKDCPADRIVTSKAGSACGFN 298
                  G +  V S P   +D + +D     + G  +   D P D +        C ++
Sbjct: 251 VLTQGDAGGW--VYSTPFSNSDKSCADVYGEAFIGSLIDS-DYPGDTL--------CAYD 299

Query: 299 HFDGTDYLPDQTKDSVFSNMTYRITDELEWFGQAI----VMRDKSITSSTALWTPNLYIA 354
           +         QT+++   + +Y +TD +E   +A       +D S     ++  P    A
Sbjct: 300 YTQAAATSVGQTRNNTLIHYSYELTDSIELTARAYWASNETKDISAPVPASISIPEGLPA 359

Query: 355 ADNP--LNPTFGTANASEVQAYHRLKGVADRTTEFDSNVVDVVTGLNLELDAGSLSWYVQ 412
              P  L      A+ S    Y R     DR  E   N+ D + GL+   +       V 
Sbjct: 360 YTTPEGLELVELVADPSAGMNY-RFDTAGDRVAEHHDNIYDFLIGLDGSAENFDWDVAVN 418

Query: 413 YSDQIVNIETDSYVFEDKLQEAV---DKGLYNPFV----EGGNATQATLDTFLHTATRKA 465
           Y+          Y  +    + V   D+   N FV       N+      T  +     A
Sbjct: 419 YNKYDNYTWGTGYQLKGATTDLVGHWDEDT-NSFVGWDPRDPNSALPPGATANYDKRMSA 477

Query: 466 TSNTTGTGLSWAALAPISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGNVLGTYGGDS-A 524
           +      GLS+       LP GD+G  +G  Y++       DA   AG ++G  GG   A
Sbjct: 478 SYLDVNGGLSFNLF---ELPAGDVGMYIGASYREETLDSKVDALAEAGQIVGGNGGSGGA 534

Query: 525 GDRSYKAAFVELELPVLDHLNVKLASRYDQYSLPDVGQLSN-SVNVRYEALDNLVLRASY 583
           G+R  KAA+ E+ LP++D L + LA RYD YS  D G   N  V++RY  +D+L+LR S+
Sbjct: 535 GERDVKAAYFEVVLPIIDSLELNLAGRYDDYS--DFGGTFNPQVSIRYNVIDSLLLRGSW 592

Query: 584 GQGFRAPSLDDLLGEPATSYDYVTDTTLCQSLPADQQKGNPACEDTQY-LRKSSGNKELE 642
           G GFRAP+L DL    +  + Y+ +   C     D       C+   Y   ++ GN+ L+
Sbjct: 593 GTGFRAPTLSDLYQGTSEGFGYIKNYLNCYKEGEDID----TCDRWDYGATRTGGNEALK 648

Query: 643 PEKSAQYSFGAVWNITENIDFVVDYYNIEITDQVSYIDAQTIV-------DLEAIGGLGA 695
           PE+S  Y+ G VW +T+ I+  VDY+++E T+ +S +DA  IV       +L    G   
Sbjct: 649 PEESESYNIGVVWEVTDEINLSVDYWSLETTNLISELDASEIVRTQAKLWELADANGEPR 708

Query: 696 YDPNYIY----VKRKADGTIDEIGAGNINMDGVQTSGLDVSFTSNFDLADLGTFKFAVEG 751
            D + +Y    + +  +G ID + +  +N+   +  G+DV   + F  +D G FKF +  
Sbjct: 709 PDVSSVYPGTSISQIGNGKIDYVVSQKLNVGLSEREGIDVKLGAGFG-SDYGDFKFGLGW 767

Query: 752 TYALEYTEQASPIAKRY---DVLGTKGYPPLRFNTTFSYAIDDFSTSLIAKYI------- 801
           +Y L+Y    S    +    D  G +  P  R N T  Y+  D + S    YI       
Sbjct: 768 SYFLKYKSSYSQAGAQILSDDYAGREDTPAHRINLTADYSFGDHALSYFGNYIGSQKSWD 827

Query: 802 ---DSYDGETPQQQEVGTNKQDFSSFTTWDLTFNYDFNSYGNVTVGARNLFDAMPAVNYS 858
               S+D E  +  + G    +  S    +LT+ Y      ++++G  NL D  P   Y 
Sbjct: 828 IVEGSWDAEAGETADDG-QLYEVDSVFYHNLTYTYTLPWNNSISLGVTNLTDEDPKFKYD 886

Query: 859 LGYPGYDTDTHNILGRVVFAGYKVKF 884
             Y G   + ++I GR  +AG++  F
Sbjct: 887 GTYNG---NLYDIRGRTYWAGFRQSF 909