Pairwise Alignments

Query, 884 a.a., TonB-dependent receptor domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 971 a.a., Outer membrane receptor proteins, mostly Fe transport from Sphingomonas koreensis DSMZ 15582

 Score =  162 bits (410), Expect = 9e-44
 Identities = 239/946 (25%), Positives = 367/946 (38%), Gaps = 175/946 (18%)

Query: 21  TAALSTMSVFAAEDDNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKTGLSDVSAVL 80
           T+ ++  +V  A  D A    + VTG+ + R    +   V  +  E I  +G +  + +L
Sbjct: 119 TSEVAPAAVEEASADPAGEGEVVVTGTLL-RGVAPTGTNVVSVKREQIVASGAASANDLL 177

Query: 81  AQMP----FNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLINGRRIAPSATFGGDATN 136
           A +P    FNT  S   D            +   G   TL L+NGRR+  +      + +
Sbjct: 178 ASIPQVGNFNTVPSGSGDMSIPIVRPNIRNLGASGGTTTLVLMNGRRMVGAGVLQ-TSVD 236

Query: 137 LNLIPMDAIERIEILRDGASAIYGSDAIGGVINIILKKTFDGLAFDAKFGNPTQGGRDEK 196
            +++P D I+R+E++ DG SAIYGSDAIGGVIN I +K FDG+  + ++G       D K
Sbjct: 237 PSIVPPDLIDRVEVVPDGGSAIYGSDAIGGVINFITRKRFDGVGANVRYGFAD----DYK 292

Query: 197 SA--SVTFGNTSDKSSSLVIIEHKQFDPLEGGQRPHLTANWDEKYGRSALYAPEGTYRPV 254
           +   ++T G      S      +   D + G  R ++ A+   + G+         +R  
Sbjct: 293 TVDGNITVGKDWGSGSLFASYSYAWHDNILGIDRDYVRADHSARGGQD--------FRAT 344

Query: 255 ASRPIKGADGTFSDPVYTGLQVPGKDCPADRIVTSKAGSACGFNHFDGTDYL---PDQTK 311
              P     G  S     GL  PG                   N  D TDY    P + +
Sbjct: 345 TCSPGNFTVGGISHAA-PGL-TPGT-----------------VNKCDTTDYADIYPRERR 385

Query: 312 DSVFSNMTYRITDELEWFGQAIVM---RDKSITSSTALWTPNLYIAADNPLNPTFGTANA 368
            +VF+ +T  ++D +++  QA V    RD +  ++T  +T  +        NP F     
Sbjct: 386 HAVFAGLTQALSDSVDF--QATVYWSRRDTTRLNATPGFTGTMVFT-----NPYFRPIGL 438

Query: 369 SEVQAYHRLKGVADRTTEFDSNVVDVVTGLNLELDAGSLSWYVQYSDQIVNIE-TDSYVF 427
           S VQ+       AD              G ++E  A   SW V  S   ++I+ +D +  
Sbjct: 439 SPVQSV--AISFAD------------AFGESMESRARFDSWGVSPS---LSIDLSDRWQL 481

Query: 428 EDKLQEAVDKGLYN-PFVEGGNATQATLDTFLHTATRKATSNTTGTGLSWAALAPI---- 482
             +        L   P +    AT A   T L TA        +      A LA I    
Sbjct: 482 RTEANYGNSYSLIREPTINATAATAALAGTTLATALNPYDPEASNP----AVLAAIRDFE 537

Query: 483 ---------------------SLPGGDLGYAVGMEY--QKIEYKDTRDAQQAAGNVLGTY 519
                                ++ GGD+  A+G EY  +K++   + D +    + +G  
Sbjct: 538 NYGQADQEMFQTRAILDGKVATIGGGDIRLAIGAEYFFEKLDSLVSLDRRNVFTSAMG-- 595

Query: 520 GGDSAGDRSYKAAFVELELPVLDHLN---------VKLASRYDQYSLPDVGQLSN-SVNV 569
              S   R  K+AF E  +P++   N         +  + R+D Y   DVG  +N  V V
Sbjct: 596 ---SVTSRHVKSAFAEALIPLVGAGNGMPGLRAFQISGSIRHDSYD--DVGGTTNPKVGV 650

Query: 570 RYEALDNLVLRASYGQGFRAPSLDDLLGEPATSYDYVTDTTLCQSLPADQQKGNPACEDT 629
            Y+  D+L++R +YG  F APSL D      TS        L  S P      +P     
Sbjct: 651 NYKPFDDLLIRGNYGTSFHAPSLAD-----TTSLADARAQILLFS-PFRASNSSPLDILR 704

Query: 630 QYLRKSSGNKELEPEKSAQYSFGAVW--NITENIDFVVDYYNIEITDQVS---------- 677
             +  + GN  L+PEK+  +S G  W     + +     YYN+  TD +S          
Sbjct: 705 PTIILAGGNANLKPEKATTWSVGFDWTPKAVQGLVVSATYYNVRFTDAISVPPFLSPVFF 764

Query: 678 --------YIDAQTIVDLEAIGGL----GAYDPNYIYVKRKADGTIDEIGAGNINMDGVQ 725
                   YI   T+  ++A+ G     GA   + +Y        +D   A   N+  + 
Sbjct: 765 TDPGYKSFYITNPTLAQVKALVGSRPLNGAPSLDSLYFGTSPYVIMD---ARRTNLGAIH 821

Query: 726 TSGLDVSFTSNFDLADLGTFKFAVEGTYALEYTEQASPIAKRYDVLGTKGYPPLRFNTTF 785
             G+D +  +       G+    + GTY L    QA   A   D L   G   L  N   
Sbjct: 822 VDGIDFNI-AYLRETGFGSINAGISGTYTLNRKTQAVQGAGFDDNL-KNGTGRLALNAAL 879

Query: 786 SYAIDDFSTSLIAKYIDSYD--GETPQQQEVGTNKQDFSSFTTWDLTFNYDFN---SYGN 840
              + DF+      +   Y   G  PQ +         SSF T DL F YD         
Sbjct: 880 GAKVGDFTARATLGHRGGYPMLGVPPQTR--------VSSFNTVDLFFAYDLGGALKNSM 931

Query: 841 VTVGARNLFDA-MPAVNYSLGYP-GYDTDTHNILGRVVFAGYKVKF 884
           +T+   N+FD   P +N S GY  G+       LGR+V  G + KF
Sbjct: 932 LTINVENVFDQDAPYLNSSTGYTNGFS------LGRLVSFGVRTKF 971