Pairwise Alignments

Query, 422 a.a., yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) from Shewanella oneidensis MR-1

Subject, 422 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score =  470 bits (1210), Expect = e-137
 Identities = 228/416 (54%), Positives = 308/416 (74%), Gaps = 2/416 (0%)

Query: 5   IDRRLNAKGKSTVNRQRFINRYKQQIKKAVSDAVTRRSVTDVDKGEKISIPTRDISEPMF 64
           IDRRL  K KS  NR+RF+ R+K  I+++V+DAV  RS+TD++K + ISIP +D+SEP F
Sbjct: 6   IDRRLAGKNKSIANRERFLRRFKGHIQRSVADAVRDRSITDLEKSKSISIPRKDVSEPFF 65

Query: 65  HQGKGGVRDRVHPGNDQFTRGDKIDRPQGGSGGGAGKGDASDSGEGNDDFVFEISKDEYL 124
           H GKGG R+ VHPGN  + +GD+I R  GGSGGG G   AS+ GEG DDF FE++++E++
Sbjct: 66  HHGKGGKREAVHPGNQDYLQGDRIPRQNGGSGGGGGSS-ASNDGEGQDDFTFELTREEFM 124

Query: 125 ELLFEDLELPNLQKNRLNKLVEYQIYRAGFTNDGVPANINIVRSLRSSLARRIAMSASKK 184
              FEDLELP L +  L ++  ++  RAG++ DG P NI++VRSLRSSL RRIA+    +
Sbjct: 125 HYFFEDLELPRLVETNLLQVPNWKNQRAGYSVDGSPNNIDVVRSLRSSLGRRIALGGPLQ 184

Query: 185 KLLKESEQELAELENIPGTKAELILDLKAQIEELKRKIAKVPFIDTFDLRFNNFSRREVP 244
           + L  +E+ L E++  P      I  L+ +I +L+ +I ++PFID FDLR+ N  R+  P
Sbjct: 185 RQLDAAEEALTEMKRKPDEHRADIKLLEEEIRQLRARILRIPFIDPFDLRYVNRVRQPQP 244

Query: 245 SSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLEVVYIRHHTQAKEVDEHE 304
           SS+AVMFC+MDVSGSMD+  KD++KRF+ILLYLFLTR Y+++EVV+IRHHT+A EVDE+ 
Sbjct: 245 SSRAVMFCVMDVSGSMDEQRKDLSKRFFILLYLFLTRNYEHIEVVFIRHHTRADEVDENT 304

Query: 305 FFYSQETGGTIVSSALKLMHEIQQARYPADEWNIYAAQASDGDNWADDSPTCKQLLEQKI 364
           FF+SQE+GGT+VSSAL+LMH+I   RY   EWNIY AQASDGDNW DDSP C++LLE  I
Sbjct: 305 FFHSQESGGTVVSSALELMHDIITKRYSPSEWNIYGAQASDGDNWNDDSPKCRELLESAI 364

Query: 365 LPLVRYFSYIEITNRAHQTLWREYESLQQHYDNIAVQHIRQAEDIYPVFRELFKKQ 420
           LPL RYF+YI++     Q LW EY  L + + + A++ ++ A +IYPVFRELF+KQ
Sbjct: 365 LPLTRYFAYIQVA-EPEQNLWTEYMQLIESHPHFAMKKVQSAAEIYPVFRELFEKQ 419