Pairwise Alignments

Query, 361 a.a., permease PerM, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 356 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E3

 Score =  132 bits (333), Expect = 1e-35
 Identities = 93/335 (27%), Positives = 174/335 (51%), Gaps = 24/335 (7%)

Query: 25  LVGLALV---LYFAGGLLAPLLVALVLAFLLEWPVAQMLKLGINRTTAASLVLIIFLGIV 81
           L G+AL+   +Y    +L P LVAL+LA+L +  V ++ K G++RT     V  +F  +V
Sbjct: 10  LGGIALLCAFVYLLHPILTPFLVALLLAYLFDPLVDRLEKFGLSRTWGVVAVFALFTLVV 69

Query: 82  VLLTFGLIPSVWRQGVSLMTDLPSMID-------KGLQTVQGLATQYPQFISVEQLNLMV 134
           + L   L+P + +Q   L    P M+D          Q+  GLA  + +F  V+    + 
Sbjct: 70  MTLLLVLVPMLAKQLFRLYELAPQMLDWLQHTAMPWAQSKLGLANGFWKFDKVKAA--IT 127

Query: 135 AELKKLLDTQHVLDIAKQLIGYSASLLVLMVYAILVPLLVFFFLKDKDQLISGSKRFFPT 194
             + +  D   +  +  Q      +L+  +   +L+P++ F+ L+D D +++  +   P 
Sbjct: 128 EHMGQATDIVGI--VLSQATASGLALIGWLANLVLIPVVSFYLLRDWDLMMAKIRSLLPR 185

Query: 195 NRQLARKVWF--EMHQQIFNYIRGKVIEIVIVGVASYILFAFMGLSYSALLGVLTGLSVL 252
           +R+  R V    E H+ +  ++RG+++ ++ +GV        +GL    L+G++ GL+ +
Sbjct: 186 DRE-ERVVSLAGECHEVLGAFVRGQLLVMLALGVIYAAGLMLVGLELGLLIGLIAGLAAI 244

Query: 253 IPYVGATLVTLPIMLVAFFQWGFSSEFGYLMLG----YGIIQALDGNVLVPILFSDAVDL 308
           +PY+G  +     ++   FQ+G      Y M+G    + + QAL+G VL P+L  D + L
Sbjct: 245 VPYMGFVIGIGAALIAGLFQFGGDL---YPMIGIVAVFMVGQALEGMVLTPLLVGDRIGL 301

Query: 309 HPVIIIAAVLVFGGLWGVLGVFFAIPLASLVKAVI 343
           HPV +I A+L  G L+G  G+  A+P+A+++  ++
Sbjct: 302 HPVAVIFAILAGGELFGFTGILLALPVAAVIMVLV 336