Pairwise Alignments

Query, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 637 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  422 bits (1084), Expect = e-122
 Identities = 237/625 (37%), Positives = 359/625 (57%), Gaps = 17/625 (2%)

Query: 4   SELQPVVQFLTSTAPFDTFSEEFIRRCAKAVIIGYYSKASGFVQFDAEAPKLYLVRSGAF 63
           +EL  + QFL    PFD    E +   A+ + I Y+ K +  + +      LYLVRSGA 
Sbjct: 11  AELIEIQQFLQQHPPFDALPNERLPEIAQQIEIAYFRKDTPIIGYKQAISDLYLVRSGAV 70

Query: 64  EVRDPEGVLLDRVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHFPQALFDQLRSESRHF 123
           EV    G L +R+ EG  FG   LL+  +V   V  +ED+L+Y  P+ALF +L  E   F
Sbjct: 71  EVYRRHGELYNRLTEGSLFGQMGLLTRNQVSFAVTAIEDTLLYCLPEALFHRLHQEFDSF 130

Query: 124 DKFFTRAFAKRLRHE-ARFKAKDLATTSRISTLMSSSPITIDAHATVTQAALLMRNSRVS 182
             F     A RLR   A+ K ++   TS++  L++ S  TID  A++ QAA  M +  VS
Sbjct: 131 ADFVEVEQAVRLRQTVAKQKEQNDLITSKVKQLLTRSAPTIDKQASIQQAAQRMADENVS 190

Query: 183 SLLVTDNHKL----------VGILTDKDLRNRVLASGLDGQIAVHQAMTTSPISISSNAL 232
           +LL+ DN  L          VGI+T++DL  RVLA G+D    V Q MT   IS+  NA 
Sbjct: 191 ALLILDNQILLDTEDDSTPMVGIVTERDLCRRVLAQGMDVTQTVSQVMTHEVISLDHNAY 250

Query: 233 IFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLA 292
           ++EAML M  +N+HHLP++ E+     + IG++  TDI+R +    LLL+  I +Q  + 
Sbjct: 251 VYEAMLAMLRNNVHHLPVLRER-----QPIGIIDMTDIVRHESQNSLLLVSRIYQQTCID 305

Query: 293 SLISVSKQIPVLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAFCWLT 352
            L  ++ ++      L++ DA +  IG  ++++  A T+R+I L +  LG AP+ +C++ 
Sbjct: 306 DLAQLANEVKASFVRLVNEDANSHMIGTAMSTIGRAFTQRIIELVEAELGAAPLPYCFVA 365

Query: 353 FGSQGRQDQAACSDQDNGLLVAEEMDDFAKG-YFDALTHAVCAGLDQCGYMFCPGNIMAQ 411
           FGS GR +Q   +DQDN L++ +  D    G YF      VC GLD+CGY  C G IMA 
Sbjct: 366 FGSMGRDEQLIVTDQDNALILDDRYDVQQHGAYFAQFAELVCRGLDRCGYPLCDGEIMAS 425

Query: 412 NPKWRMSLNQWQKVFEKWVITPEPKALMHASIFFDMRSVYGPQSLFDALQDKVLAQTKDN 471
           NPKWRM+  +W+  F  W+  P P+AL++ASIFFD+  VYG     + L   ++ + + N
Sbjct: 426 NPKWRMTRKEWETCFADWIDNPNPQALLNASIFFDLDGVYGRTKWAEQLSGFIVRRARRN 485

Query: 472 DIFLAGMAGNSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIR 531
             FLA +A N+L  +PPLGFF+ FV+E+DG     I+LK +G A + D+ RV+AL+AG R
Sbjct: 486 QRFLACLARNALNRTPPLGFFKNFVMEKDGRHNNSINLKRRGTAPLADLIRVHALAAGSR 545

Query: 532 EVNTAKRIRALMDANILNRKDALNLADAHEFIAHMRLSNQGYQHTQGLKISNYLLPGHLS 591
             N+ +R+  +++A +L +    +L DA EFIA +R+ +Q     Q  +  N + P HLS
Sbjct: 546 AKNSFERLDDVIEAGLLPQGKGKDLRDALEFIAMVRIRHQAIDVEQEREADNSIEPEHLS 605

Query: 592 SLVRHQLRDAFKVVHDAQSGMKMKF 616
              R  L+DAF+++ + Q+ +K ++
Sbjct: 606 DFERRNLKDAFQILSNGQNYLKYRY 630