Pairwise Alignments

Query, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 607 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  154 bits (388), Expect = 1e-41
 Identities = 143/615 (23%), Positives = 260/615 (42%), Gaps = 46/615 (7%)

Query: 11  QFLTSTAPFDTFSEEFIRRCAKAVIIGYYSKASGFVQFDAEAPKLYLVRSGAFEVRDPEG 70
           +F   + PF+  + E   +   A+ + Y+ +    +        L+++  G  E R P+G
Sbjct: 4   KFNMQSPPFNRLTAEQQHQLRSALDVAYFRQRDVLIDAQHPVTHLHILIKGTVEERSPDG 63

Query: 71  V-LLDRVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHFPQALFDQLRSESRHFDKFFTR 129
             +    A  + F    +   E   ++   LED+L Y  P+++F QL  ++  F  +F  
Sbjct: 64  KEVFAHYANDDLFDVRAMFE-ELSKHQYMALEDTLSYLLPKSIFLQLYEQNGEFAAYFDN 122

Query: 130 AFAKRLRH-EARFKAKDLAT--TSRISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLV 186
             AKR    EA  + K++A    +++   +   P  +     +      ++   + + LV
Sbjct: 123 NLAKRQELIEAAAQQKNIAEFILTKVDRSIYHPPFILSPEQPIHSVTQQLKERGIDAALV 182

Query: 187 ---------TDNHKL-VGILTDKDLRNRVLASGLDGQIAVHQAMTTSPISISSNALIFEA 236
                      NH     I+T  ++ + V+  G      V +  T   + +     +F A
Sbjct: 183 ELHPSDPRLAHNHAHPYAIVTRTNMLHAVMLEGRPLDTPVGEIATFPVLHVDEGDFLFNA 242

Query: 237 MLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASLIS 296
           M++M+   I  + +         +A+G+++   IL    +   +L   I R   +  L  
Sbjct: 243 MVMMTRQRIKRVMVCLGN-----QAVGLLSLIQILSAFSTHSHVLTLAIARAASIDELAL 297

Query: 297 VSKQIPVLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAF----CWLT 352
            + +   L+++L+S   R   +  ++ +V + +  +   L        P A     C + 
Sbjct: 298 AANKQRELVESLMSRGVRTRFVMELIAAVNEQIIEKAFEL------VVPPALHDQCCLVV 351

Query: 353 FGSQGRQDQAACSDQDNGLLVAEEMD-DFAKGYFDALTHAVCAGLDQCGYMFCPGNIMAQ 411
            GS+GR +Q   +DQDN L++ + ++    +   + LTH +     Q GY  CPG +M  
Sbjct: 352 LGSEGRGEQILKTDQDNALIIQDGLEWHQCQPIMETLTHTLL----QLGYPLCPGKVMVN 407

Query: 412 NPKWRMSLNQWQKVFEKWVITPEPKALMHASIFFDMRSVYGPQSLFDALQDKVLAQTKDN 471
           NPKW  S + W++    WV    P+ +M  +IF D  +V G ++L   ++  +       
Sbjct: 408 NPKWVRSQSDWKRTLTDWVKAARPEQVMDIAIFADAHAVAGNRALLAPVKAHLQHLMAGQ 467

Query: 472 DIFLAGMAGNSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIR 531
           ++ LA     +L  S PL  F         S  +GID+K  G   I    R  +L   I 
Sbjct: 468 ELILAEFTRPALNFSVPLTLFGNV-----KSSKQGIDIKQGGIFPIVHGVRALSLEHAID 522

Query: 532 EVNTAKRIRALMDANILNRKDALNLADAHEFIAHMRLSNQ-GYQHTQGLKISNYLLPGHL 590
             NT  RI AL+   +L ++   NL++A +    +RL+ Q G QH+     +N L    L
Sbjct: 523 ANNTFDRIEALVKKRVLEQETGDNLSEAFKLFLKLRLAQQLGNQHS-----TNQLDFKQL 577

Query: 591 SSLVRHQLRDAFKVV 605
               R  LR +  VV
Sbjct: 578 DRTERDLLRHSLHVV 592