Pairwise Alignments

Query, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1104 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score = 63.5 bits (153), Expect = 5e-14
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 5/118 (4%)

Query: 152 ISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASGLD 211
           ++ LM+ + + ++   T+  AA +M  +R+SSLLV +   +VGI+T++D+  R L++ +D
Sbjct: 6   LADLMTWNIVEVERRTTLLAAAEVMETARISSLLVREGALMVGIVTERDIL-RALSANVD 64

Query: 212 GQIAVHQAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTD 269
           G +AV Q M++   +  S+  +  A  L++E  I HL +  E      + +G+V+ +D
Sbjct: 65  GLLAVDQVMSSPVYTADSHMSVHHAYHLLAEKGIRHLLVTGEAG----QPVGVVSESD 118



 Score = 37.4 bits (85), Expect = 4e-06
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 152 ISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASGLD 211
           ++ +M S    +    TV QA  LM  S +  ++V +  + +GILT++D   R    G D
Sbjct: 134 VNAVMQSGVQLLQPGDTVRQALALMSASSLRCVVVAEAGRPLGILTERDAL-RFFRRGAD 192

Query: 212 GQIAVHQAMTTSPI-SISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDI 270
                  A+ ++P+ SI     + +A+  M   ++ HL ++        + +G+V+  DI
Sbjct: 193 SLEQPLAAVMSAPVASIPEGYPLSQAVDRMQAEHVRHLVVVGAAG----EVVGVVSEHDI 248

Query: 271 L 271
           +
Sbjct: 249 V 249